Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 251 / 5e-85 RmlC-like cupins superfamily protein (.1) AT5G39160 250 / 1e-84 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 249 / 3e-84 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39110 249 / 3e-84 RmlC-like cupins superfamily protein (.1) AT5G39130 248 / 1e-83 RmlC-like cupins superfamily protein (.1) AT5G39150 243 / 8e-82 RmlC-like cupins superfamily protein (.1) AT5G39120 242 / 2e-81 RmlC-like cupins superfamily protein (.1) AT5G39180 241 / 4e-81 RmlC-like cupins superfamily protein (.1) AT4G14630 232 / 2e-77 GLP9 germin-like protein 9 (.1) AT5G38960 229 / 2e-76 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030048 [exp] 414 / 2e-149 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 413 / 7e-149 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 390 / 9e-140 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 389 / 2e-139 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 387 / 9e-139 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 336 / 1e-118 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 334 / 9e-118 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 331 / 2e-116 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035185 [exp] 330 / 3e-116 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162932 [exp] 317 / 6e-111 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 317 / 6e-111 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 311 / 1e-108 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 309 / 7e-108 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 308 / 2e-107 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 304 / 7e-106 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G465100 [exp] 291 / 1e-100 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G464000 [exp] 289 / 4e-100 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 289 / 6e-100 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 269 / 5e-92 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10026962 pacid=23142803 polypeptide=Lus10026962 locus=Lus10026962.g ID=Lus10026962.BGIv1.0 annot-version=v1.0 ATGGCGAATCAGTCTGTTATATCAACCTTATTGTTAGCGGTAGCTCTCACGTTCTGTTATCTCGCCTCTGCTGTTGATCCTTCTCCCCTCCAGGACTTCT GCGTGGCCGATTTGACTAACCAAGTGAGAATGAATGGATTTGCTTGCAAGAATCCTACAACGGTCCAAGCAAGCGACTTCTCCTTCAGTGGGCTCCACAA TCAGGGGAACACATACAATGCGGTGGGATCTTTTGTGACCCCGGTTACAGTGGCTCAGATCCCCGGGCTCAACACATTAGGAATCTCGATGGTCCGCATC GACTATGCTCCTTGGGGAATTGGTTCTCCCCACACTCATCCACGAGCCACCGAGGTACTGACGGTCATCGAGGGCACTTTGGAAGTTGGATTTGTCACGT CCAACCCTGAGAATCGTCTTATTTCCAAGATTCTTCAGAAGGGTGATGTCTTTGTGTTTCCGGTTGGGTTGATCCACTTCCAGCGCAACGTTGGGCATGG AAATGCGGTGGCTATTGCCGCTTTGAGCAGCCAGAATCCGGGAGTCATCACTATTGCAAACTCTGTATTTGGATCGAAGCCTGATATTGCGACCGATGTC CTTGCCAAGGCATTCCAAGTGGATAAGAGCATTGTTGAGAAGCTCCAGTGGAATTTCTAG
AA sequence Show only first row Show all	>Lus10026962 pacid=23142803 polypeptide=Lus10026962 locus=Lus10026962.g ID=Lus10026962.BGIv1.0 annot-version=v1.0 MANQSVISTLLLAVALTFCYLASAVDPSPLQDFCVADLTNQVRMNGFACKNPTTVQASDFSFSGLHNQGNTYNAVGSFVTPVTVAQIPGLNTLGISMVRI DYAPWGIGSPHTHPRATEVLTVIEGTLEVGFVTSNPENRLISKILQKGDVFVFPVGLIHFQRNVGHGNAVAIAALSSQNPGVITIANSVFGSKPDIATDV LAKAFQVDKSIVEKLQWNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10026962 [exp]	0	1
					Lus10027558 [exp]	1.0	0.8989
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10036928 [exp]	2.8	0.7987
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	5.0	0.7480
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10018522 [exp]	17.2	0.7643
					Lus10032831 [exp]	18.4	0.7099
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	27.1	0.7574
AT2G23945			Eukaryotic aspartyl protease f...		Lus10015487 [exp]	28.1	0.7418
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003124 [exp]	40.8	0.7121
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	43.6	0.7125
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10027845 [exp]	45.8	0.7082

Compare expression of checked genes

Lus10026962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.