Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 77 / 7e-15 Plant protein of unknown function (DUF247) (.1) AT3G50130 59 / 4e-09 Plant protein of unknown function (DUF247) (.1) AT5G22550 58 / 8e-09 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 54 / 2e-07 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50140 54 / 2e-07 Plant protein of unknown function (DUF247) (.1) AT5G22540 52 / 9e-07 Plant protein of unknown function (DUF247) (.1) AT1G67150 51 / 9e-07 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50120 51 / 1e-06 Plant protein of unknown function (DUF247) (.1) AT3G50150 51 / 1e-06 Plant protein of unknown function (DUF247) (.1) AT3G50180 50 / 2e-06 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009504 [exp] 303 / 1e-97 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 132 / 4e-33 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 129 / 8e-32 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 125 / 2e-30 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 108 / 8e-25 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 101 / 2e-22 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 85 / 3e-17 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 83 / 1e-16 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 59 / 7e-09 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085300 [exp] 96 / 6e-21 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 95 / 2e-20 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 94 / 3e-20 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 91 / 3e-19 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 90 / 5e-19 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 89 / 1e-18 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 89 / 1e-18 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 84 / 5e-17 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 68 / 5e-12 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 66 / 4e-11 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10026964 pacid=23142840 polypeptide=Lus10026964 locus=Lus10026964.g ID=Lus10026964.BGIv1.0 annot-version=v1.0 ATGGCGTCCCCATTTTCCATCATAATAAACCCCAAATTCACCGAGAAAGAATGGATCGTCCAGATGGAACACAACCTCCAGCTCGACCTCGACGCTGTCT CCCAAACTCCCGTCTCCATTTTCCAGGTCCCTGAATCCGTACGAATCCTCAACCGCCAAGCTTACTCCCCTCAGCTACTCGCTCTCGGTCCGTACCACCA CTGGAATCCCCAACTTTACCACTCCGAAACTTTTAAGCTCGCAGCTGCCAAGAAGGCCCACAAACAATTACTCCGCCTCTCCGACTTCCGTGAATTCGTC GCCGGCATCTCCCACCTCGTCCCCGACGTCCGCGCTTCCTACGACCGCCATCTCCACATGAGCGACCAAGCTCTCGCCTGGATTATGGCCGTCGATGGAT TGTTCTTGCTCCACCTCATTTTCTCCGACTCCTCCGATTCGATTGACAGCAAGTGGACGACGATGGACAGGAAATCGTTGCTCGACGTGGTCATGCTCGA GAATCAAATCCCTATGTTTCTCCTCACTGAATTTCTGACGAAATTCACCGATTCCGATTCCTCCACTACTGCGTCTTTAGCTTCGGTTTCCGTTGACTTC TGTAGGAAGGTTTCCCCTCTGGAGTTGCCCGACCCAGATCCGCTGGATCTGAAGCCCCGACATTTGCTGGACCTTTTCTACCAGCTACTTCTCACTACCA ATCATACCAAATCGGCTAGGTTTCCAGAGGAGCTCCACCAGAATGGGAATGGAAACGGTGTAACTGTACAGGAAATTACGAAGACGGATCTGGGTTCGGG TACTGGTATTCTCCAGTCCTGGCTGAGGAGAATCTCGGAGGAGGAAACGGCGGGGATAATCCCTACATCGACTCAGCTCAGAAACGCCGGAATGAAATTC GGAATCGCGAAGCAAGGAGTGACAGGGATAAGCTTCAACAAGGATACAAAGACTCTCTACCTTCCGGTATTCACATGGAAGCCGAATTGCGAGGTGGTGA TGAGGAATCTGGTGGCGTACGAGGCGGTGGCGAAACCTGACTGCTTCTTCCTCGGCCGATACGCCGATCTGATGAGCGCGATTTGCCGGACGGCAGAGGA CGCGAAACTGCTCCAAGAGGAAGGAATAATAATCGTTGCCGGGGGGAACGGAAGCGACGTCGTTTTGGAGGTGTTTGGGCGCGGGATGGGAGTAGGGGGC GGGAGGAAGACGGTATTGGAAGGGGAAATCGAGGCCGTTAACGAATTCTACGCGAAGAATCGGAGGGTGGAGATTTGGAAAGTGGGGAAGAGGTTCGGGA AGCGCGCGTGGGAGAAAACGACGTTTGTGGCGGCGCTGTTTCTGTTGCTCTTCTTTTTCTTCCACGTTGTGGTGGACATTTTCCGTTATCCTCCTGGTTC TTCGGGTTATGGTGTAGGAACCGCCGTCACCGGCACCAGAAGTTTCAGTGTTGCCAGCTTGTTGCTTCCGCCGTCAGGAGTCGTTACTACTCCGGCTGCG TCTCTGTAG
AA sequence Show only first row Show all	>Lus10026964 pacid=23142840 polypeptide=Lus10026964 locus=Lus10026964.g ID=Lus10026964.BGIv1.0 annot-version=v1.0 MASPFSIIINPKFTEKEWIVQMEHNLQLDLDAVSQTPVSIFQVPESVRILNRQAYSPQLLALGPYHHWNPQLYHSETFKLAAAKKAHKQLLRLSDFREFV AGISHLVPDVRASYDRHLHMSDQALAWIMAVDGLFLLHLIFSDSSDSIDSKWTTMDRKSLLDVVMLENQIPMFLLTEFLTKFTDSDSSTTASLASVSVDF CRKVSPLELPDPDPLDLKPRHLLDLFYQLLLTTNHTKSARFPEELHQNGNGNGVTVQEITKTDLGSGTGILQSWLRRISEEETAGIIPTSTQLRNAGMKF GIAKQGVTGISFNKDTKTLYLPVFTWKPNCEVVMRNLVAYEAVAKPDCFFLGRYADLMSAICRTAEDAKLLQEEGIIIVAGGNGSDVVLEVFGRGMGVGG GRKTVLEGEIEAVNEFYAKNRRVEIWKVGKRFGKRAWEKTTFVAALFLLLFFFFHVVVDIFRYPPGSSGYGVGTAVTGTRSFSVASLLLPPSGVVTTPAA SL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	0	1
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	1.7	0.8678
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	2.0	0.9011
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	3.0	0.8366
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	3.7	0.8859
AT1G74160			unknown protein		Lus10017857 [exp]	6.7	0.8524
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	8.2	0.7686
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	9.6	0.8534
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	11.0	0.8277
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	12.0	0.8215
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	13.6	0.8474

Compare expression of checked genes

Lus10026964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.