Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24840 411 / 2e-147 tRNA (guanine-N-7) methyltransferase (.1) AT5G17660 61 / 7e-11 tRNA (guanine-N-7) methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020164 [exp] 491 / 7e-179 AT5G24840 412 / 1e-147 tRNA (guanine-N-7) methyltransferase (.1) Lus10015923 [exp] 73 / 5e-15 AT5G17660 366 / 5e-128 tRNA (guanine-N-7) methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003900 [exp] 433 / 8e-156 AT5G24840 426 / 7e-153 tRNA (guanine-N-7) methyltransferase (.1) Potri.006G277100 [exp] 427 / 2e-153 AT5G24840 427 / 1e-153 tRNA (guanine-N-7) methyltransferase (.1) Potri.013G070800 [exp] 67 / 5e-13 AT5G17660 344 / 5e-119 tRNA (guanine-N-7) methyltransferase (.1) Potri.016G091800 [exp] 42 / 0.0004 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02390 [flax] [poplar] Methyltransf_4 Putative methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026965 pacid=23142923 polypeptide=Lus10026965 locus=Lus10026965.g ID=Lus10026965.BGIv1.0 annot-version=v1.0 ATGGCAGAAACGGAGCTAAACCCAACTTTCAGCAGGACGACTGGCTTGCCTAGGAAGCGATTCTATCGTGCACGAGCTCACAGCAATCCGTTAAGCGATT CGCATTTCCCTGTTCCAGTCTCCCCTGCTCATGTTGACTACTCCATTCATTTCCCTGATGAAGCTAATAGCTTCAAGAGGATTCAATTCGTGGATGTCGG CTGTGGGTTCGGAGGTTTGTTGATTAGTCTCGCTACCCTTTTCCCCGAAACCTTGATGGTAGGGATGGAGCTTAGAGATAAGGTCACAGAGTATGTCAAG GAACGAATCCTTGCTCTGAGGACGACAAACCCTGGACAGTATCAGAACGTTTCAGTGGTCAGGACGAATTCGATGAAGTACATCCCTAATTACTTTGCGA AAGGACAGCTATTGAAGATGTTCTTTCTGTTCCCCGATCCTCACTTCAAGGAGAAAAATCACCGCAGGAGAGTGATTAGCTCGCACTTGTTGGATGAGTA TGCTTATGTTCTTCAAGTTGGTGGGATTATCTATACTATCACAGATGTGGAGGAACTCGGAGAGTGGATGAAGACATGTTTGGAACAGCACCCCTTGTTT GAGCCACTCGGTGAAGCGGAACTTGAATCGGACCCTGTTGTTAAGCTCTTGAGCACTGCAACTGAAGAAGGTCAGAAGGTTGCTAGGAATGAAGGCCAGA CATATCAGGCGGTGTATAGACGAATTGAAGCTTCCAATTGA
AA sequence Show only first row Show all	>Lus10026965 pacid=23142923 polypeptide=Lus10026965 locus=Lus10026965.g ID=Lus10026965.BGIv1.0 annot-version=v1.0 MAETELNPTFSRTTGLPRKRFYRARAHSNPLSDSHFPVPVSPAHVDYSIHFPDEANSFKRIQFVDVGCGFGGLLISLATLFPETLMVGMELRDKVTEYVK ERILALRTTNPGQYQNVSVVRTNSMKYIPNYFAKGQLLKMFFLFPDPHFKEKNHRRRVISSHLLDEYAYVLQVGGIIYTITDVEELGEWMKTCLEQHPLF EPLGEAELESDPVVKLLSTATEEGQKVARNEGQTYQAVYRRIEASN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10026965 [exp]	0	1
AT1G61570		TIM13	translocase of the inner mitoc...		Lus10017352 [exp]	4.2	0.8118
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	6.0	0.8020
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	6.9	0.7723
AT3G25545			unknown protein		Lus10029095 [exp]	8.5	0.7591
AT4G21110			G10 family protein (.1)		Lus10014385 [exp]	9.9	0.8092
AT1G30880			unknown protein		Lus10001224 [exp]	12.8	0.7923
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	13.4	0.7716
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	15.4	0.7652
AT5G41685			Mitochondrial outer membrane t...		Lus10016473 [exp]	15.8	0.7506
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	16.4	0.7948

Compare expression of checked genes

Lus10026965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.