Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31340 355 / 4e-119 myosin heavy chain-related (.1.2) AT2G24420 346 / 2e-115 DNA repair ATPase-related (.1.2) AT4G30090 116 / 2e-28 EMB1353 embryo defective 1353 (.1) AT1G28410 46 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020166 [exp] 670 / 0 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2) Lus10036424 [exp] 444 / 2e-154 AT4G31340 409 / 3e-141 myosin heavy chain-related (.1.2) Lus10041099 [exp] 437 / 1e-151 AT4G31340 397 / 3e-136 myosin heavy chain-related (.1.2) Lus10015403 [exp] 42 / 0.0006 AT1G28410 189 / 9e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276900 [exp] 454 / 8e-158 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2) Potri.018G003700 [exp] 448 / 2e-155 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) Potri.006G076700 [exp] 124 / 1e-31 AT4G31340 157 / 5e-44 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026967 pacid=23142908 polypeptide=Lus10026967 locus=Lus10026967.g ID=Lus10026967.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTAAGTTCCTGGTGTCCTCGCTCTTCCTCGCCCTACTTCTGTCTGCTGTTTGGGCCGATGTCGACGGCGATGTTGGTGAGCCGGCGATTC AAGTTACTGAATCTTCTGACCTCCAGTCTTCTGCCCTGAAGGCCGAACTTGACCAAGCCAAGTCCAAGATCCAGGAACTTGAGTCCCAGTTTGAAAGGAA AGCAAAGGAATTGAAGGAGAAAGAGGAGAAATTAGCTAAGAATGAGAAACTCATAAAAGAGAAGGCTGATAGCATTACATCATTGCAGAGTGAAATATCC TCCCTTCAGAAAAAAGGGAAGTTGGACTCTGCTGAGCAGCTGAACAAGGCCAATGCACAAGTTGTGGACTTAGAGAAGCAGCTTGATAGACTCAAAGCAG AGTTTGAAGCACAAAATACGGAGAAGGAGGCCCTTGAGAATAGAGCAAGTAAAGCTGAAACAAAACTTGATGAATTTAACTCAAAACTTAAGGATCTGCA AAAGATCAGCGATGAGCAGAAGAGCAAAATACGTAAAACTGAACGGGCACTTAAAGTTGCTGAGGAGGAAATGATGAAGGCAAAGTTGGAGGCCAACTCA AGAACAAAAGAGTTAATGGAGGCTCATGGTGCTTGGCTTCCTCCATGGCTTGCTGTACAGTTTGTTCACTTTCAGTCTTTGGCACAGAAGCATTGGAATG CCCATGGAAAGCCTACCATGGAATTAGTGATTCAAAAGGCCCAGGAACACAAGGAAAAGGCTGCAAAGTGGGCTGAACCACACCTGGAAACAGTTAAAAC TAAATGGGTTCCATCTGTGAGGGATCAGTGGGTGGAGGTAAGAACTCAGGTTGAACCACATGTGCGATCAGTAAGTGCCAAAACCGTGGAAGTGTATGAG ACTTCAAAGACTGCAATAACGGCTCATGTTATCAAAATACAAGAGATAGTGGACCCCTACTTTCAGGAAGCTAAGAAGTTCAGTAAGCCATACATTGAGC AAGTTGCCACAGTCACTAAGCCCCATGTTGACAAAATTAAGGTGGTTGTTAGACCATATACTAAGCAAGCAGTTCGTTCATATGGGAGGTTCCTAGAGTC GGCCACTACATATCATCATCAGGTGCAAGGAACTGTTCAAGAGACCCTGAAGAAGCATGAATTGACAAAACAGTTTGCAACTAAAGAATTGGTCTGGTTT TTGGCATCAGCTCTACTGGCCCTGCCAATAATCATCCTGTCTAGAGTTTGTTCAGCTGCTCTCAGCAAGAAGACAAAGAGAACAAGTAGAGGAGGAGGCG CCCATTCTAACCACTCTCATCGCCGGAAGGGTAAAAGGGTTCATTCCGAAAAGTGA
AA sequence Show only first row Show all	>Lus10026967 pacid=23142908 polypeptide=Lus10026967 locus=Lus10026967.g ID=Lus10026967.BGIv1.0 annot-version=v1.0 MAAAKFLVSSLFLALLLSAVWADVDGDVGEPAIQVTESSDLQSSALKAELDQAKSKIQELESQFERKAKELKEKEEKLAKNEKLIKEKADSITSLQSEIS SLQKKGKLDSAEQLNKANAQVVDLEKQLDRLKAEFEAQNTEKEALENRASKAETKLDEFNSKLKDLQKISDEQKSKIRKTERALKVAEEEMMKAKLEANS RTKELMEAHGAWLPPWLAVQFVHFQSLAQKHWNAHGKPTMELVIQKAQEHKEKAAKWAEPHLETVKTKWVPSVRDQWVEVRTQVEPHVRSVSAKTVEVYE TSKTAITAHVIKIQEIVDPYFQEAKKFSKPYIEQVATVTKPHVDKIKVVVRPYTKQAVRSYGRFLESATTYHHQVQGTVQETLKKHELTKQFATKELVWF LASALLALPIIILSRVCSAALSKKTKRTSRGGGAHSNHSHRRKGKRVHSEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31340			myosin heavy chain-related (.1...		Lus10026967 [exp]	0	1
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	2.0	0.7658
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	5.3	0.7179
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	19.3	0.7105
AT1G76210			Arabidopsis protein of unknown...		Lus10016002 [exp]	30.2	0.5515
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	34.9	0.6958
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	36.7	0.6947
AT3G50120			Plant protein of unknown funct...		Lus10018320 [exp]	41.4	0.5795
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	42.1	0.6765
AT2G31560			Protein of unknown function (D...		Lus10027022 [exp]	43.3	0.6884
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	45.4	0.6931

Compare expression of checked genes

Lus10026967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.