Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55510 336 / 1e-110 RBL REBELOTE, Noc2p family (.1) AT2G18220 211 / 2e-61 Noc2p family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036510 [exp] 591 / 0 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041417 [exp] 537 / 0 AT3G55510 487 / 2e-163 REBELOTE, Noc2p family (.1) Lus10020167 [exp] 533 / 0 AT3G55510 459 / 3e-154 REBELOTE, Noc2p family (.1) Lus10025551 [exp] 198 / 3e-56 AT2G18220 831 / 0.0 Noc2p family (.1) Lus10027010 [exp] 169 / 2e-46 AT2G18220 760 / 0.0 Noc2p family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043400 [exp] 463 / 9e-159 AT3G55510 591 / 0.0 REBELOTE, Noc2p family (.1) Potri.001G012800 [exp] 210 / 6e-61 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.003G213601 [exp] 164 / 4e-47 AT2G18220 416 / 4e-140 Noc2p family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [flax] [poplar] Noc2 Noc2p family
Representative CDS sequence Show only first row Show all	>Lus10026968 pacid=23142822 polypeptide=Lus10026968 locus=Lus10026968.g ID=Lus10026968.BGIv1.0 annot-version=v1.0 ATGATATTTGTGCTTCAGGAAGCAAATGAGGTGTTCCGGAAAATTTTGGGAGTTTCAAGTTCCACTCAAAAGAAGGAGGTCATTTTGGAATTGAAAAATT CATTAAAGTGGAAAACCCTGAGGCCTCTCATTAAGTTGTACTTGAGAAGTACAATCTTTCTTCTCAACGAAGTTACTGACTCTGAGCTATTAGCTTTTAT TATGAAACGGCTAAGGACGTTTGTAGCCTTCTTTGCTGCGTTTCCATCATTACTGCAGAGGCTGATTAAGTTCATCTTTGGGCAACTGGTAAAGGGATCT GTCAGTGCAAAATCATTCCTTGCCATACAAGATGTCGCTGTTGTGTTCAACTCGGATTTGTTTGAGACATGCTTCGTCAAGGCATACAAGACCATTATTG GCCACTGCAAATTCGTAGATCCTGCCATTTTTGAACACCTTCAGTTTCTTAAGAAGTCCTTCATCGAGCTATGTTCTCAAGATATGCAGAAATCAATGCA GATGGCAATTCTTTCAATCAGAGAACTTGCTAAGAGTTTACAGCTGGGTTTACGAACTAGGCAGAAGGATGCGGTAAAGAAGATTTGCAGCTGGCAGTAT GTTAATTGCATTGATCTATGGGTTGATTTTATATCAGTCAATACACACGATTATAAGCTCCAGCCATTGCTTTATACGATGATTCAGATAATAAATGGAG TAGCAGTCCTCTTTCCAGGGCCAAGATACTTACATTTGAGAGTTAAAAGTGTTCAGTGGTTGAATCATCTCTCCAATTCCTGCGGTACATTCATCCCTAT TGCATCGCTGGCACTTGATATTTTGGAATACAATATTGACATAGAGCATCAGAACCCGAGAAAGAGTTTCGACTTGTCATCTGAAGTTAAGGAATTCCAT GAAAGGACGAGCGTTGAGAGTTTTCGCCGAATGGTGAAACGTTTTATAGATCAGGTGGAGCAGAATGTCGAGTATGTGCGCAAGAAGAGGGATGAAGTTG CTTTCTCACCGACAGACGAGGAGGCAGCTGCGTCATTTCTTCAGAGAAGTACATTCCAAAATCTAACACGAGCTCGTCATGTTGATAATGGTGCAGCTGG AGAAATCAGGTGGCAACCTTGCGTGTATTCAGTACTACAAGAGTCTCACAGGAAGGGTGGAGTCGAGGGATCTGCTTATGACTAA
AA sequence Show only first row Show all	>Lus10026968 pacid=23142822 polypeptide=Lus10026968 locus=Lus10026968.g ID=Lus10026968.BGIv1.0 annot-version=v1.0 MIFVLQEANEVFRKILGVSSSTQKKEVILELKNSLKWKTLRPLIKLYLRSTIFLLNEVTDSELLAFIMKRLRTFVAFFAAFPSLLQRLIKFIFGQLVKGS VSAKSFLAIQDVAVVFNSDLFETCFVKAYKTIIGHCKFVDPAIFEHLQFLKKSFIELCSQDMQKSMQMAILSIRELAKSLQLGLRTRQKDAVKKICSWQY VNCIDLWVDFISVNTHDYKLQPLLYTMIQIINGVAVLFPGPRYLHLRVKSVQWLNHLSNSCGTFIPIASLALDILEYNIDIEHQNPRKSFDLSSEVKEFH ERTSVESFRRMVKRFIDQVEQNVEYVRKKRDEVAFSPTDEEAAASFLQRSTFQNLTRARHVDNGAAGEIRWQPCVYSVLQESHRKGGVEGSAYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	0	1
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	2.4	0.8912
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10025942 [exp]	3.0	0.8496
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	6.9	0.8665
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	7.5	0.8626
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10010169 [exp]	8.2	0.8403
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	14.2	0.8553
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	15.6	0.8477
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	17.3	0.8558
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	17.4	0.8363
AT5G07940			unknown protein		Lus10034693 [exp]	18.7	0.8116

Compare expression of checked genes

Lus10026968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.