Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24810 908 / 0 ABC1 family protein (.1.2) AT4G24810 176 / 2e-47 Protein kinase superfamily protein (.1.2.3) AT5G50330 174 / 7e-47 Protein kinase superfamily protein (.1.2) AT5G64940 171 / 6e-44 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 163 / 2e-42 Protein kinase superfamily protein (.1) AT3G07700 152 / 4e-38 Protein kinase superfamily protein (.1.2.3) AT2G40090 139 / 1e-34 ATATH9 ABC2 homolog 9 (.1) AT1G79600 132 / 1e-31 Protein kinase superfamily protein (.1) AT4G31390 130 / 4e-31 Protein kinase superfamily protein (.1.2) AT5G24970 130 / 5e-31 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026970 [exp] 930 / 0 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 925 / 0 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10032628 [exp] 182 / 1e-48 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10043122 [exp] 171 / 1e-44 AT4G24810 696 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 172 / 2e-44 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 157 / 8e-40 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 154 / 1e-38 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 152 / 1e-37 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028292 [exp] 138 / 5e-34 AT2G40090 842 / 0.0 ABC2 homolog 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276600 [exp] 844 / 0 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G003400 [exp] 828 / 0 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.018G003600 [exp] 816 / 0 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.018G000101 [exp] 210 / 4e-63 AT5G24810 225 / 6e-69 ABC1 family protein (.1.2) Potri.015G091000 [exp] 179 / 2e-48 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 177 / 1e-47 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 177 / 7e-46 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 172 / 1e-44 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 166 / 5e-43 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 159 / 3e-40 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0013 [flax] [poplar] Beta-lactamase PF00144 [flax] [poplar] Beta-lactamase Beta-lactamase CL0016 [flax] [poplar] PKinase PF06176 [flax] [poplar] WaaY Lipopolysaccharide core biosynthesis protein (WaaY) CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10026971 pacid=23142895 polypeptide=Lus10026971 locus=Lus10026971.g ID=Lus10026971.BGIv1.0 annot-version=v1.0 ATGTTGGCACCGATTGGATGGGTAAGCATTTATAGAAGACGACTGAGAGTGTTTGCACTTAGTATATGGATTTACCTAGATTATAAGGCTTTACAGCAAA GAGAGAAATGGAGTAGTCCACGTAAGAGAGTTGCTCTATGGGAGAATGCCCATGAGCGAAATGCTAAGCGTCTTCTCAATGTGATGATCGAACTTGAAGG TTTGTGGGTGAAATTTGGACAATATTTATCCACTCGTGCTGATGTACTTCCTCATGCTTACCTATCGGTTCTCAGACAGCTACAAGATGCACTTCCTCCC CGTCGTTTGAAAGAGATACATGCTACTATACAGAAGGAGTTGGGAAAGGGCCCAGATGAACTCTTCTCCTATTTTGATGAAACTCCTCTAGCAACAGCTT CGATTGCTCAAGTTCACCGTGCAACTTTAAAAAATGGGCGGGAAGTGGTTGTAAAAGTTCAACATGAAGGCATCAAAATGATCATACTTGAGGATTTAAA GAATGCTAAGGCAATTATTGACTGGATTGCATGGGCAGAACCAGAATACAACTTCAACCCTGTCATTGATGAGTGGTGCAAAGAAGCTCCAAAGGAACTT GACTTCAATCATGAAGCTGATAACACAAGGGCCGTATCCGAAAATTTGGGATGCAAGAAGAAATATGATAAAAAAAAAGATGAAAATTACGTGGATGTCC TTATCCCAGAAATTATTCTGTCAACTGAAAAGATTTTAATCTTAGAGTATATGGATGGAATTCGTTTGAACGACAATGTAGCATTGGAAGCTGCTGGTGT AAAAAAGCAAAAGATTGTTGAGGAAATAACTCGTGCTTATGCTCATCAAATATATGTGGACGGAATGTTTAACGGCGATCCACATCCCGGGAATTTCCTT GTGAGTAAGGATTCTCCTCATCGTCCAATCCTACTTGACTTTGGACTCACAAAGCAAATATCAGCCTCCTTGAAACAAGCCCTTGCCAAAATGTTTCTTG CATCTGTAGAGGGGGATCATGTGGCACTCTTGTCCGCTCTTTCGGAAATGGGACTTAAGCTTCGGTTAGACATGCCAGATCAAGCAATGGAGGCCACTAC TATGTTCTTCCGTGCTGCTGCTCCAACCGCCGATCCCGGGGCAAATATGAGGGCTTTGTCAGAGAAAAGAACAAAACAAATGAAGACGATCCAAGAAAAG ATGAACCTCAACCAGAAGGAAGTTAAACGGTTTAATCCGTTTTGCTACTTTCAGATTGATGCATTTCCTGGAGACATTGTGATCTTTGGGCGAGTGCTTA ATCTTCTTAGAGGGCTTTCAACTACTTTGAACGTTCGCATAGTATATCAAGAGATCATGAGACCGTTTGCTGAATCTGTTCTACATGGATATATCAGTAA GGCACCAACAACAAATGCAAAATGGATCTATGATACCCCTATTCATTCTAATGTGGAAGCTAAGTTGAGGCAACTTTTGGTTGAGCTTGGGAAGGAAGAG GCGATCCTCGGAGTCCAGGTTTGTGCTTACAAAGATGGGAAGGTGATTATTGATACTGCTGGAGGAATGTTGGGGAAGTACGACCCTCGGCCAGTTCAAC TTGATAGCCTCTTCCCAGTTTTCTCAGCAACAAAGGGTGTCACAGCCGGTTTAGTGCATTGGCTGGCAGATAACGGGCTGTTCTTGATGGATCAGAATGC TTCTAGGAAGAAATTTCAAGAGGTACTGGAAGAAGCAATTATTAAACCCCTTAACATCGATGGTGAACTATACATTGGAATACCTCCTGGTGTGGAATCT CGAGTTGCTAGCCTGACAGTAGATATAAACGACATAAGCAAGCTATCACAGGTTGCAGCTGCCAGTCGTCCCAATAATCTTCCATCTTCAATATTCCAAC AAGACAGGGTTGGTCAGTTGCTAGCCACCGTTCCAGCACTCTTCAACTTGCTAATCACACGCCGTGCCATCATTCCCGCTGCCAATGGACACTGCTCAGC TCGCGCCCTTGCACGATATTACGCCGTGCTAGCCAACAACGGTGTCGTACCACCTCCACATTCTTCATCATCATTATCATCCAACGTCCCTCTTCTCGGA AGCCACCCTCACATTCCCAAATTCACTGGAAATCAGAAAACACCAAAACAGAAGAAAGGAAAGAAACGAAACAAGGAACCAAATGAAATTGACAGCAGCA GTGACGAGGATAGAAAGATTAGTAAACGCCATAAGAATTACACGAAGCTAAATAACGTCAATGATTGCAATAACGAAAACCGGTCGACTCGGATTTATAA TGAGCCGAGGATTCATGAAGCGTTCTTGGGAGTAGGGGGGGAGTACGGTAGATTGGCGATGCCGAATGGGGCATTTGGGTTAGGGTTTAAGAGGTTGAGG TCGTCGAAAGATGGGAGCTTTCTGGGATTTGGGCACTCGGGGATGGGTGGTTCGACTGGGTTTTGCTACCCTAAGGAGAAATTTGCTGTAGCAGTGACAG TGAACAAGTTGTCGTCCGGGTATGTGACGAGGAGAATTATGCAGTTGGTGTGCTCCGAGTTGGATTTGCCGTTGTCGGAAGAACTAGAGTCCACTGCCAT GAAGCCTTTGATTAACTGA
AA sequence Show only first row Show all	>Lus10026971 pacid=23142895 polypeptide=Lus10026971 locus=Lus10026971.g ID=Lus10026971.BGIv1.0 annot-version=v1.0 MLAPIGWVSIYRRRLRVFALSIWIYLDYKALQQREKWSSPRKRVALWENAHERNAKRLLNVMIELEGLWVKFGQYLSTRADVLPHAYLSVLRQLQDALPP RRLKEIHATIQKELGKGPDELFSYFDETPLATASIAQVHRATLKNGREVVVKVQHEGIKMIILEDLKNAKAIIDWIAWAEPEYNFNPVIDEWCKEAPKEL DFNHEADNTRAVSENLGCKKKYDKKKDENYVDVLIPEIILSTEKILILEYMDGIRLNDNVALEAAGVKKQKIVEEITRAYAHQIYVDGMFNGDPHPGNFL VSKDSPHRPILLDFGLTKQISASLKQALAKMFLASVEGDHVALLSALSEMGLKLRLDMPDQAMEATTMFFRAAAPTADPGANMRALSEKRTKQMKTIQEK MNLNQKEVKRFNPFCYFQIDAFPGDIVIFGRVLNLLRGLSTTLNVRIVYQEIMRPFAESVLHGYISKAPTTNAKWIYDTPIHSNVEAKLRQLLVELGKEE AILGVQVCAYKDGKVIIDTAGGMLGKYDPRPVQLDSLFPVFSATKGVTAGLVHWLADNGLFLMDQNASRKKFQEVLEEAIIKPLNIDGELYIGIPPGVES RVASLTVDINDISKLSQVAAASRPNNLPSSIFQQDRVGQLLATVPALFNLLITRRAIIPAANGHCSARALARYYAVLANNGVVPPPHSSSSLSSNVPLLG SHPHIPKFTGNQKTPKQKKGKKRNKEPNEIDSSSDEDRKISKRHKNYTKLNNVNDCNNENRSTRIYNEPRIHEAFLGVGGEYGRLAMPNGAFGLGFKRLR SSKDGSFLGFGHSGMGGSTGFCYPKEKFAVAVTVNKLSSGYVTRRIMQLVCSELDLPLSEELESTAMKPLIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	0	1
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	3.5	0.8248
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10023398 [exp]	3.9	0.7628
AT5G42140			Regulator of chromosome conden...		Lus10042800 [exp]	5.2	0.7765
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	7.1	0.8189
AT5G23200			unknown protein		Lus10010192 [exp]	8.2	0.7898
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	8.8	0.7923
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	15.7	0.7825
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	18.3	0.7837
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	18.4	0.7690
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	18.5	0.7304

Compare expression of checked genes

Lus10026971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.