Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05990 62 / 1e-12 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G20780 63 / 2e-12 CML42 calmodulin like 42 (.1) AT3G29000 62 / 6e-12 Calcium-binding EF-hand family protein (.1) AT5G44460 60 / 2e-11 CML43 calmodulin like 43 (.1) AT3G22930 57 / 2e-10 CML11 calmodulin-like 11 (.1) AT2G41100 58 / 3e-10 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4) AT3G47480 57 / 3e-10 Calcium-binding EF-hand family protein (.1) AT4G12860 55 / 7e-10 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT4G14640 55 / 1e-09 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT4G03290 54 / 1e-09 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020171 [exp] 254 / 3e-87 AT3G59440 67 / 3e-14 Calcium-binding EF-hand family protein (.1) Lus10021134 [exp] 67 / 9e-14 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10017174 [exp] 66 / 3e-13 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10003239 [exp] 64 / 7e-13 AT4G20780 249 / 5e-85 calmodulin like 42 (.1) Lus10035611 [exp] 61 / 9e-12 AT4G20780 242 / 3e-82 calmodulin like 42 (.1) Lus10020389 [exp] 57 / 2e-11 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10000972 [exp] 59 / 4e-11 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10026301 [exp] 59 / 8e-11 AT5G39670 135 / 5e-40 Calcium-binding EF-hand family protein (.1) Lus10042369 [exp] 57 / 2e-10 AT5G39670 133 / 2e-39 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276500 [exp] 121 / 6e-35 AT4G20780 74 / 8e-17 calmodulin like 42 (.1) Potri.006G112500 [exp] 65 / 4e-13 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.016G142000 [exp] 63 / 3e-12 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.017G029700 [exp] 61 / 2e-11 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.008G159300 [exp] 57 / 1e-10 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.007G128600 [exp] 57 / 3e-10 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.010G080900 [exp] 56 / 3e-10 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.002G239100 [exp] 56 / 5e-10 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G084800 [exp] 56 / 1e-09 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.002G077300 [exp] 54 / 2e-09 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10026974 pacid=23142833 polypeptide=Lus10026974 locus=Lus10026974.g ID=Lus10026974.BGIv1.0 annot-version=v1.0 ATGGCCGGAGGAGGGATCACTGGAGTTTGCTCCAAATTGATTGCGGACATCCTATCCCGATTGCATAAGCAGAAGCAGCCAACTAACTCACCAATCAAAT CACCACCTCCGACGACCAACGCCGACCAGCTGACGATGAGGGCGCTGACGGAGGTGTTCGGGATGCAAAAAGACGGCAAGATCAACATGGTCAAGGCTCG CCGCGTGGTGGAGAAACTGGGCCTCCTCCTCGGCGACGACGAAGAAGAAGCTATAATTGGGGTGGAAGAGCTGGCAAAGGAGAATATTGGTAGTAGCAGT AGTAATACGACGTTGTCGTCGGAGGAAGAAGTGATGATGATGAGGGAAGCTTTCAGGATATTTGACGAGGATGGCAATGGATACATTGATGCCCAGGAGC TACAGCGAGTGCTCCTCTGCTTGGGTCTGGACAGAGGGTGCTGGGATCTCGATGATTTCAACGCAATGCTCAAGTTGGTGGATCTCAACTCTGATGGTAA AGTTGATTTCTCGGAGTTCCAGCTAATGATGATGATGCCCTCCTCCTCATGA
AA sequence Show only first row Show all	>Lus10026974 pacid=23142833 polypeptide=Lus10026974 locus=Lus10026974.g ID=Lus10026974.BGIv1.0 annot-version=v1.0 MAGGGITGVCSKLIADILSRLHKQKQPTNSPIKSPPPTTNADQLTMRALTEVFGMQKDGKINMVKARRVVEKLGLLLGDDEEEAIIGVEELAKENIGSSS SNTTLSSEEEVMMMREAFRIFDEDGNGYIDAQELQRVLLCLGLDRGCWDLDDFNAMLKLVDLNSDGKVDFSEFQLMMMMPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	0	1
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	1.0	0.9164
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	2.0	0.9159
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10006589 [exp]	2.8	0.8872
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	2.8	0.8685
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	3.0	0.8979
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	8.8	0.8691
AT2G44890		CYP704A1	"cytochrome P450, family 704, ...		Lus10038000 [exp]	9.3	0.8343
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017866 [exp]	10.4	0.8452
AT5G42785			unknown protein		Lus10001961 [exp]	13.0	0.8528
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	14.8	0.8752

Compare expression of checked genes

Lus10026974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.