Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) AT5G10580 316 / 8e-110 Protein of unknown function, DUF599 (.1.2) AT5G24790 250 / 7e-84 Protein of unknown function, DUF599 (.1) AT5G24600 147 / 1e-43 Protein of unknown function, DUF599 (.1.2) AT3G18215 137 / 9e-40 Protein of unknown function, DUF599 (.1) AT5G43180 118 / 2e-32 Protein of unknown function, DUF599 (.1) AT5G46060 85 / 1e-19 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020172 [exp] 331 / 9e-117 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1) Lus10009010 [exp] 150 / 1e-44 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10032916 [exp] 142 / 2e-41 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 142 / 3e-41 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 128 / 1e-35 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 127 / 3e-35 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10025217 [exp] 103 / 5e-27 AT5G43180 182 / 2e-57 Protein of unknown function, DUF599 (.1) Lus10025134 [exp] 100 / 1e-25 AT5G43180 184 / 5e-58 Protein of unknown function, DUF599 (.1) Lus10009640 [exp] 92 / 2e-22 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G278000 [exp] 377 / 4e-134 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 157 / 2e-47 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 154 / 2e-46 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.016G137800 [exp] 139 / 2e-40 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 110 / 2e-29 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 89 / 3e-21 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10026976 pacid=23142872 polypeptide=Lus10026976 locus=Lus10026976.g ID=Lus10026976.BGIv1.0 annot-version=v1.0 ATGATGAAGTGGAGCCAAAGTGATCTAGACGTCATCCTTGTTCCATTGGCTTTCATGGTAGTTGGTGGCTACCATGCTTGGCTCTGGCACAAGGTTCGTA CTCAACCCCTCTCCACCACCCTCGGCACCAACTCCGCCGGCCGCCGTTTCTGGGTCTCCGCCATCATGAGGGACAACGACAAGAAGAACATCCTGGCCGT CCAAACTCTACGGAACCTGATAATGGGGTCCACACTAATGGCCACGACATCCATCCTGCTGTCGGCCGGGTTAGCAGCCATAATAAGCAGCACGTACAGC GTGAAGAGGCCGCTCAACGACTCCGTTTTCGGGGCCCACGGGGATTTCATGGTGGCCTTGAAATACGTCACCATCCTAACCATTTTCCTCTTCTCCTTCT TCTGCCACTCCCTCTCGATCCGGTTCGTTAACCAGGTGAACCTCTTAATCAACACTCCGCCGCATCCGGAGGCGCTCATGATCACCCCCGATTACGTGTC GGACCTCCTCGAAAAGGGGTTCGTGCTCAACACGGTCGGAAACCGCCTTTTCTACGCCGCTCTGCCTCTCCTACTATGGATTTTCGGACCGGTCCTCGTC TTTCTCTGCTCGGTCGCGATGGTTCCTATTTTGTACAACCTCGATGTCATGTTCGGAGCCGCCGCGGTTGGAGAGAAGAAGGGCGGCGGTGTGGATCATA TGGGTTTGGTGTAG
AA sequence Show only first row Show all	>Lus10026976 pacid=23142872 polypeptide=Lus10026976 locus=Lus10026976.g ID=Lus10026976.BGIv1.0 annot-version=v1.0 MMKWSQSDLDVILVPLAFMVVGGYHAWLWHKVRTQPLSTTLGTNSAGRRFWVSAIMRDNDKKNILAVQTLRNLIMGSTLMATTSILLSAGLAAIISSTYS VKRPLNDSVFGAHGDFMVALKYVTILTIFLFSFFCHSLSIRFVNQVNLLINTPPHPEALMITPDYVSDLLEKGFVLNTVGNRLFYAALPLLLWIFGPVLV FLCSVAMVPILYNLDVMFGAAAVGEKKGGGVDHMGLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31330			Protein of unknown function, D...		Lus10026976 [exp]	0	1
AT4G12410			SAUR-like auxin-responsive pro...		Lus10032237 [exp]	10.1	0.7396
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	11.1	0.7484
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	12.7	0.7793
AT1G08315			ARM repeat superfamily protein...		Lus10008655 [exp]	12.8	0.7514
AT1G13360			unknown protein		Lus10034310 [exp]	18.8	0.7469
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	23.5	0.7367
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	25.9	0.7438
AT5G25280			serine-rich protein-related (....		Lus10006660 [exp]	40.3	0.6582
					Lus10031757 [exp]	45.8	0.7011
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	47.3	0.6856

Compare expression of checked genes

Lus10026976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.