Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24400 161 / 1e-50 SAUR-like auxin-responsive protein family (.1) AT4G31320 152 / 5e-47 SAUR-like auxin-responsive protein family (.1) AT5G20810 88 / 3e-22 SAUR-like auxin-responsive protein family (.1.2) AT3G43120 86 / 2e-21 SAUR-like auxin-responsive protein family (.1) AT4G34750 80 / 3e-19 SAUR-like auxin-responsive protein family (.1.2) AT4G00880 75 / 1e-17 SAUR-like auxin-responsive protein family (.1) AT3G61900 75 / 1e-17 SAUR-like auxin-responsive protein family (.1) AT2G21220 73 / 3e-17 SAUR-like auxin-responsive protein family (.1) AT2G46690 74 / 4e-17 SAUR-like auxin-responsive protein family (.1) AT1G56150 72 / 2e-16 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035716 [exp] 120 / 3e-34 AT2G24400 157 / 9e-49 SAUR-like auxin-responsive protein family (.1) Lus10033348 [exp] 113 / 1e-31 AT2G24400 155 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10037302 [exp] 108 / 7e-29 AT2G24400 150 / 2e-44 SAUR-like auxin-responsive protein family (.1) Lus10034888 [exp] 85 / 6e-21 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2) Lus10012426 [exp] 78 / 2e-18 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 78 / 3e-18 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10042374 [exp] 74 / 5e-17 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 72 / 1e-16 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 72 / 4e-16 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G278100 [exp] 171 / 8e-55 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 143 / 2e-43 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 130 / 6e-39 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.018G063400 [exp] 89 / 2e-22 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.004G164300 [exp] 88 / 2e-22 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.006G137200 [exp] 89 / 4e-22 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.009G125900 [exp] 82 / 3e-20 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.018G132400 [exp] 81 / 2e-19 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 79 / 7e-19 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 78 / 2e-18 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10026977 pacid=23142964 polypeptide=Lus10026977 locus=Lus10026977.g ID=Lus10026977.BGIv1.0 annot-version=v1.0 ATGGATTGCAAGAAGTCTAACAAGATTACCGAAATCGTTAGGCTTCAGCAGATCCTGAAGAAATGGCGAAAGCTAGCCAACTCATCCAAAACCTCACCTT CCTCCTCCATACCTGCAAATAACAGCTACAACTACAGCGGCAGCAAAAGCATCAAGTTCCTGAAGAGAACTCTGTCATTATCAGAGAGCAGTGGCGATGG TGGTTCCTCCACCAGCATCCCAGTTCCCAAGGGGTTCCTGGCTGTGAGCGTTGGAGAGGAACAGAAGAGATTCACAATCCCAACAGAGTATCTCAGCCAC CCTGCATTCCACATTTTGCTAAGAGAGGCAGAAGAGGAGTTTGGGTTCCAGCAGGCTGGAGTGCTGAGAATCCCCTGTGGAGTTGCTGTTTTCGAGAGCG TGCTGAGGATAGTGGAAGACAAGAAAGATGACTACTTCATGTTCAACGTTGAAGATGGTGTTGCTGGAGGATATGGTTACTGTTCATTGACTGGCCAGCA TACTCCAACTCACCACCACCCTCAAAGCCCTATGTGCAGATGA
AA sequence Show only first row Show all	>Lus10026977 pacid=23142964 polypeptide=Lus10026977 locus=Lus10026977.g ID=Lus10026977.BGIv1.0 annot-version=v1.0 MDCKKSNKITEIVRLQQILKKWRKLANSSKTSPSSSIPANNSYNYSGSKSIKFLKRTLSLSESSGDGGSSTSIPVPKGFLAVSVGEEQKRFTIPTEYLSH PAFHILLREAEEEFGFQQAGVLRIPCGVAVFESVLRIVEDKKDDYFMFNVEDGVAGGYGYCSLTGQHTPTHHHPQSPMCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	2.4	0.8117
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	3.7	0.8085
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	4.0	0.8002
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	7.1	0.8022
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	8.7	0.7222
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	9.0	0.7629
AT2G45320			unknown protein		Lus10030280 [exp]	13.8	0.7687
AT5G04420			Galactose oxidase/kelch repeat...		Lus10037933 [exp]	16.2	0.6862
					Lus10025086 [exp]	20.0	0.7678
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	21.2	0.7606

Compare expression of checked genes

Lus10026977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.