Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26110 108 / 3e-28 Protein of unknown function (DUF761) (.1) AT5G56980 69 / 6e-14 unknown protein AT4G26130 61 / 5e-11 unknown protein AT5G47920 45 / 8e-06 unknown protein AT4G16790 42 / 0.0001 hydroxyproline-rich glycoprotein family protein (.1) AT4G02170 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024988 [exp] 237 / 2e-78 AT2G26110 172 / 1e-51 Protein of unknown function (DUF761) (.1) Lus10019517 [exp] 231 / 8e-77 AT2G26110 148 / 5e-43 Protein of unknown function (DUF761) (.1) Lus10025985 [exp] 67 / 2e-13 AT5G56980 82 / 4e-18 unknown protein Lus10014282 [exp] 67 / 3e-13 AT5G56980 84 / 1e-18 unknown protein Lus10011239 [exp] 40 / 0.0006 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G053000 [exp] 124 / 2e-34 AT2G26110 167 / 2e-49 Protein of unknown function (DUF761) (.1) Potri.006G228800 [exp] 118 / 3e-32 AT2G26110 142 / 5e-40 Protein of unknown function (DUF761) (.1) Potri.006G152200 [exp] 75 / 4e-16 AT5G56980 103 / 2e-25 unknown protein Potri.001G171701 [exp] 48 / 2e-07 AT1G15385 53 / 7e-11 unknown protein Potri.001G008160 [exp] 46 / 6e-07 AT2G26110 45 / 7e-07 Protein of unknown function (DUF761) (.1) Potri.003G062300 [exp] 45 / 1e-06 AT1G15385 58 / 8e-13 unknown protein Potri.001G008080 [exp] 40 / 5e-05 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1) Potri.008G167200 [exp] 40 / 0.0003 AT4G14380 87 / 2e-21 unknown protein Potri.001G406600 [exp] 40 / 0.0004 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026978 pacid=23142909 polypeptide=Lus10026978 locus=Lus10026978.g ID=Lus10026978.BGIv1.0 annot-version=v1.0 ATGTTGGAGGAAACGTACGAGCTATGTTCAATCACCGCCGGAAATCATCCACACACAGCCGCAACCCACATCATCCACACACCGCCGCAACTCACCAGAT CTCCCTCTGTGTTGCAGAGATTGAAGTCGTTCAATCCCTATAATTACCTCCAGCACGCACCCGCACAGCAGCATGAGGAGCAAGACGAACAAGGGCCAGA GATTAAGTTTAGCAGGACACAGACAGAGGAGGAGGAAGAAGCGGTGGAGACACTTGACGAGATATACAGCAAGCTTCAGAGCAGTAACAAAGTTGTAGGG AGGTCGATGTCGGACAGAAAGCCAGTAGCTGGGGAGATCCCGAAGAAGCTTCCTAAGAAGATGAAGAAATCGGCCAGCACCAAGTCGGCGTTCGGCCATT TCGAGGAAGAGAAGATAGTAGAGGCTCGACGACCTGCAACGGTTAGGGAACAGAAAAGCAAGAAGATGATAAAGGAAGATGAAGAGGCGGCAGAGGATGG GAGGTGTGTGGATGCCAAGGCTGACGACTTCATAAACAAGTTTAAGCAGCAGCTGAAGCTACAGAGGCTTGATTCCATTATCAGGTATAAGGAGATGGTT GGTAGAGGGAGCGCCAAGTAG
AA sequence Show only first row Show all	>Lus10026978 pacid=23142909 polypeptide=Lus10026978 locus=Lus10026978.g ID=Lus10026978.BGIv1.0 annot-version=v1.0 MLEETYELCSITAGNHPHTAATHIIHTPPQLTRSPSVLQRLKSFNPYNYLQHAPAQQHEEQDEQGPEIKFSRTQTEEEEEAVETLDEIYSKLQSSNKVVG RSMSDRKPVAGEIPKKLPKKMKKSASTKSAFGHFEEEKIVEARRPATVREQKSKKMIKEDEEAAEDGRCVDAKADDFINKFKQQLKLQRLDSIIRYKEMV GRGSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26110			Protein of unknown function (D...		Lus10026978 [exp]	0	1
AT2G21290			unknown protein		Lus10018053 [exp]	3.7	0.7785
AT2G37120			S1FA-like DNA-binding protein ...		Lus10015073 [exp]	7.5	0.7084
AT3G60480			unknown protein		Lus10034728 [exp]	9.8	0.7062
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10000128 [exp]	12.4	0.6702
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10029234 [exp]	15.2	0.6822
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	32.6	0.6697
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	34.7	0.6920
AT3G16175			Thioesterase superfamily prote...		Lus10037582 [exp]	37.1	0.6744
AT1G66420	GeBP		DNA-binding storekeeper protei...		Lus10017793 [exp]	38.1	0.6898
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10033649 [exp]	38.3	0.6419

Compare expression of checked genes

Lus10026978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.