Plant FIBer expression Database

Lus10026980 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10620 225 / 9e-76 methyltransferases (.1)
AT5G10605 61 / 5e-13 methyltransferases (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020175
[exp]
321 / 1e-113 AT5G10620 236 / 3e-80 methyltransferases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G278500
[exp]
244 / 1e-83 AT5G10620 283 / 2e-98 methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0098 SPOUT PF02590 SPOUT_MTase Predicted SPOUT methyltransferase
Representative CDS sequence
>Lus10026980 pacid=23142940 polypeptide=Lus10026980 locus=Lus10026980.g ID=Lus10026980.BGIv1.0 annot-version=v1.0
ATGTCACTGCCTGCGTCTCATCTCTTCACCAAGAGGGCTTTACCGGTGCGAATCGTCACAGTGGGGAAGAAGAGACCTGGTGGAGTTGAGTTGTTAGTAG
ATGAGTACATTGGAAAACTCAAACGCTATTGCCCTGTTGCTGACGTTCAAATACGCTCCAACCCTAGGAATGCTCGTGAGACTAGGGCTCAGGTTGATGA
CGAAGACATGGCGGTGATGAACCTTATCACCTCTGATGATTGGGTTGTGATGTTGGATGAGCGAGGAAAGGACCTTGATTCCGTGGAGATGGCTGAATTG
ATTGGAGACTCGGGAAATACAGGAGCTTCTAGGCTGACGTTCTGTATTGGAGGACCATATGGTCATGGACAACAAATAAGGAAACGGGCTGATGTATCCA
TCCGACTGTCATCTATGGTTTTGAACCATCAGATTGCACTGGTTGTGCTCGTGGAGCAACTTTACAGGTTAGACTCTGTTCAGCTTTGTGCTATCTGTTA
TGAGTCCGGTTTCTACAGCTGGTAA
AA sequence
>Lus10026980 pacid=23142940 polypeptide=Lus10026980 locus=Lus10026980.g ID=Lus10026980.BGIv1.0 annot-version=v1.0
MSLPASHLFTKRALPVRIVTVGKKRPGGVELLVDEYIGKLKRYCPVADVQIRSNPRNARETRAQVDDEDMAVMNLITSDDWVVMLDERGKDLDSVEMAEL
IGDSGNTGASRLTFCIGGPYGHGQQIRKRADVSIRLSSMVLNHQIALVVLVEQLYRLDSVQLCAICYESGFYSW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G10620 methyltransferases (.1) Lus10026980
[exp]
0 1
AT4G16770 2-oxoglutarate (2OG) and Fe(II... Lus10004746
[exp]
1.7 0.9015
AT2G27790 RNA-binding (RRM/RBD/RNP motif... Lus10030600
[exp]
6.2 0.8818
AT1G67390 F-box family protein (.1) Lus10013664
[exp]
8.1 0.8674
AT1G74320 Protein kinase superfamily pro... Lus10005386
[exp]
9.8 0.7951
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Lus10005091
[exp]
11.9 0.8811
AT2G17787 unknown protein Lus10013567
[exp]
12.3 0.8714
AT2G17787 unknown protein Lus10017274
[exp]
14.7 0.8711
AT5G37590 Tetratricopeptide repeat (TPR)... Lus10020809
[exp]
15.2 0.8622
AT3G28050 nodulin MtN21 /EamA-like trans... Lus10039428
[exp]
18.5 0.8565
AT1G45150 unknown protein Lus10002387
[exp]
21.2 0.8450

Lus10026980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.