Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16130 946 / 0 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 789 / 0 Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020178 [exp] 1187 / 0 AT4G16130 625 / 0.0 arabinose kinase (.1) Lus10037789 [exp] 61 / 2e-09 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003100 [exp] 1009 / 0 AT4G16130 1660 / 0.0 arabinose kinase (.1) Potri.018G145700 [exp] 820 / 0 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G138204 [exp] 389 / 1e-123 AT4G16130 1003 / 0.0 arabinose kinase (.1) Potri.018G138202 [exp] 187 / 1e-54 AT4G16130 179 / 2e-52 arabinose kinase (.1) Potri.008G102800 [exp] 60 / 5e-09 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.010G148100 [exp] 57 / 5e-08 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain CL0329 [flax] [poplar] S5 PF10509 [flax] [poplar] GalKase_gal_bdg Galactokinase galactose-binding signature
Representative CDS sequence Show only first row Show all	>Lus10026983 pacid=23142825 polypeptide=Lus10026983 locus=Lus10026983.g ID=Lus10026983.BGIv1.0 annot-version=v1.0 ATGCGGATAGAGGAAAGTGAAGGAGGTCCGGCCTCGAGTAAGCACCTCGTCTTCGCTTACTATGTCACCGGCCATGGATTCGGCCATGCCACTCGTGTCG TCGAGGTAGTAAGGAATCTGATTGTGGCTGGGCATGATGTGCACGTGGTTACCGGTGCCCCGGATTTTGTATTCACTTCAGAAATACAGTCTCCCCGTCT ATTCATTCGCAAGGTACTACTGGACTGTGGTGCAGTTCAAGCGGATGCATTGACAGTTGACCGGCTTGCTTCCTTGGAGAAGTATTCAGAGACGGCAGTC AAGCCCCGGGAATCTATCTTGGCAACGGAGATAGAGTGGCTTAATACCATCAAGGCAGACCTAGTGGTTTCAGATGTTGTTCCAGTTGCATGCTGTGCAG CTGCTGATGCTGGTATTCGATCTGTTTGTGTCACCAACTTTAGTTGGGATTTCATATATGCAGAGTATGTCATGGCAGCTGGAAATCATCACCGATCAAT AGTTTGGCAGATTGCAGAGGACTACTCTCATTGCGAGTTCCTGATTCGCCTGCCAGGATATTGTCCTATGCCAGCATTCCGGGATGTTATTGATGTACCC CTTGTTGTCAGGAGGTTGCACAAATCCCGAAGAGAGATAAGAAAGGAACTTGGCATTAAAGAAGATGTGAAGCTTGTTATCCTCAACTTTGGTGGGCAGC CGTCTGGCTGGAAGTTGAAGGAGGAATTCTTGCCCCCTGGTTGGCTGTGTCTGGTGGCAGCTCATATCTTACAAGAGACAGCTACTGGGAAGGACTATGC CTCAGATAAGTTAAGTGGTGCAAGAAGGTTACGTGATGCAATAGTTCTTGGATATCAACTACAAAGGGTCCCTGGGAAAGATATTTTCGTCCCAGAATGG TATGCAAATGCTGCATCTGAACTTAGTAAGTCTACTGGGTCACCAACTGTTCAAGAATATCAAGGAGGACCCCTGATGAGCTCATGTATAGAAGATTTTG AAATTCTTGACGGTGACATTCAAGGCTTGCAAGATACAATGAGTTTCTTGAAGAGCGTGGCAGAACTAGATGAGATAAATGAGTATGAAAAGAATTCCGA GAAGCGTCAAATGCGGGAGCGTAAAGCTGCTGCAGGACTTTTCAATTGGGAGGAAGATATCTATGTGGCAAGAGCACCTGGGAGGTTGGATGTGATGGGG GGCATAGCTGACTATTCAGGCAGCCTTGTCTTGCAGATGCCTACAAGAGAAGCTTGTCACGTTGCTGTACAAAGGAACTATCCTAATAAGCATAAGCTCT GGAAACATGCCCAGGCAAGGCAAAATGCGAAGGGCCAAGGACCAACTCCTGTTCTCCAGATTGTATCTTATGGCTCTGAATTAAGTAATCGTGGTCCAAC CTTTGACATGGATTTATCTGACTTCATCGAAGATGGACAGCCAATGCCATATGAGAAGGCAAAGAAATTTTTTGCGCAGGATCCCTCCCAAAAGTGGGCA GCTTATGTGGCAGGAACGATTCTGGTTTTGATGAAAGAACTTGGTGTGCGCTTTGAAGATAGCATCAGCATGCTGGTTTCGTCTGCCGTCCCTGAAGGCA AAGGTGTGTCTTCTTCTGCTTCCGTGGAGGTTGCAAGCATGTCTGCTATTGCTGCTGCCCATGGATTGAGCATCAGTCCTAGAGATATTGCTTTGCTCTG CCAAAAGGTGGAGAATCACATTGTTGGAGCCCCTTGCGGTGTAATGGATCAGATGACATCAGCATGTGGCGAAGCCAACAAGCTTTTGGCGATGGTGTGT CAGCCTGCTGAGGTAATTGGGCTTGTCGAAATTCCTGGCCATATTCGCTTCTGGGGCCTTGACTCTGGGATCCGTCACAGTGTTGGTGGTGCGGACTATG GATCAGTAAGAATTGGTGCTTTCATGGGCCGGAAGATAATAAAATCTATAGCATCTGATGTGTTGTCTAAATCACTTGACTATAGTAACGGATTCAACCA AGATGAATTGGAAGATGATGGGGTAGCGTTATTTGAAGCTGAATCATCACTGGATTACTTATGCAACTTGACACCGCACAGATATGAAGCCCTGTATGCG AAGTTGCTTCCTGAAACACTTGGGGGTCAGGAATTTCTGGACAAGTACATTGATCACAGTGATGCTGTAACAGTGATTGACAACAACCGAAAGTATGTAG TGAGTGCACCTGCTAAACATCCTATATATGAGAATTTCCGAGTGAAGAGCTTCAAAGCATTGCTAACTTCTGCAAATTCGGATGAACAACTCATTGCTCT AGGAGAACTACTATATCAGTGTCACTACAGCTACAGTGCGTGTGGGCTAGGGACAGATGGAACAGACAGGCTTGTACGAATGGTGCAGGAAATGCAACAC AAATCCAAGTCCAAATCTGAAGGTGGGACCTTATATGGAGCCAAAATCACCGGGGGAGGCTCCGGCGGTACTGTCTGTGTAATCGGCAGGAACTCTTTAC TCAGCAGCCAACAGATTCTTGAGGTTCAGCAGAAGTACAAAGTAGCAACTGGGTATTTGCCATTTATTTTTGAGGGGTCTTCTCCCGGAGCTGGGAAATT CGGGCACTTGAGGATTCGACGACGTTGGTAG
AA sequence Show only first row Show all	>Lus10026983 pacid=23142825 polypeptide=Lus10026983 locus=Lus10026983.g ID=Lus10026983.BGIv1.0 annot-version=v1.0 MRIEESEGGPASSKHLVFAYYVTGHGFGHATRVVEVVRNLIVAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV KPRESILATEIEWLNTIKADLVVSDVVPVACCAAADAGIRSVCVTNFSWDFIYAEYVMAAGNHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVP LVVRRLHKSRREIRKELGIKEDVKLVILNFGGQPSGWKLKEEFLPPGWLCLVAAHILQETATGKDYASDKLSGARRLRDAIVLGYQLQRVPGKDIFVPEW YANAASELSKSTGSPTVQEYQGGPLMSSCIEDFEILDGDIQGLQDTMSFLKSVAELDEINEYEKNSEKRQMRERKAAAGLFNWEEDIYVARAPGRLDVMG GIADYSGSLVLQMPTREACHVAVQRNYPNKHKLWKHAQARQNAKGQGPTPVLQIVSYGSELSNRGPTFDMDLSDFIEDGQPMPYEKAKKFFAQDPSQKWA AYVAGTILVLMKELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLSISPRDIALLCQKVENHIVGAPCGVMDQMTSACGEANKLLAMVC QPAEVIGLVEIPGHIRFWGLDSGIRHSVGGADYGSVRIGAFMGRKIIKSIASDVLSKSLDYSNGFNQDELEDDGVALFEAESSLDYLCNLTPHRYEALYA KLLPETLGGQEFLDKYIDHSDAVTVIDNNRKYVVSAPAKHPIYENFRVKSFKALLTSANSDEQLIALGELLYQCHYSYSACGLGTDGTDRLVRMVQEMQH KSKSKSEGGTLYGAKITGGGSGGTVCVIGRNSLLSSQQILEVQQKYKVATGYLPFIFEGSSPGAGKFGHLRIRRRW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	0	1
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	1.0	0.9741
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	2.4	0.9546
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	3.9	0.9520
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	3.9	0.9410
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	4.6	0.8874
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	4.9	0.9309
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10038136 [exp]	5.0	0.8811
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	6.0	0.9469
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	6.5	0.9291
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031879 [exp]	8.1	0.8854

Compare expression of checked genes

Lus10026983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.