Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31300 334 / 2e-115 PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT2G24390 150 / 2e-44 AIG2-like (avirulence induced gene) family protein (.1), AIG2-like (avirulence induced gene) family protein (.2), AIG2-like (avirulence induced gene) family protein (.3) AT4G31310 148 / 1e-43 AIG2-like (avirulence induced gene) family protein (.1) AT3G28930 120 / 9e-33 AIG2 AVRRPT2-INDUCED GENE 2, AIG2-like (avirulence induced gene) family protein (.1) AT3G28940 118 / 5e-32 AIG2-like (avirulence induced gene) family protein (.1) AT5G39730 114 / 2e-30 AIG2-like (avirulence induced gene) family protein (.1) AT5G39720 104 / 9e-27 AIG2L avirulence induced gene 2 like protein (.1) AT3G28950 103 / 1e-26 AIG2-like (avirulence induced gene) family protein (.1) AT5G40580 102 / 8e-25 PBB2 20S proteasome beta subunit PBB2 (.1.2.3) AT3G27430 100 / 3e-24 PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020180 [exp] 370 / 2e-129 AT4G31300 429 / 7e-155 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10020179 [exp] 208 / 2e-67 AT4G31310 115 / 2e-33 AIG2-like (avirulence induced gene) family protein (.1) Lus10014581 [exp] 105 / 9e-26 AT5G40580 471 / 2e-169 20S proteasome beta subunit PBB2 (.1.2.3) Lus10032102 [exp] 103 / 3e-25 AT3G27430 473 / 6e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10006426 [exp] 76 / 2e-15 AT3G26340 462 / 7e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10011369 [exp] 75 / 5e-15 AT3G26340 465 / 1e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10041194 [exp] 59 / 4e-10 AT3G22630 363 / 9e-130 20S proteasome beta subunit D1 (.1) Lus10039351 [exp] 57 / 2e-09 AT3G22630 371 / 5e-133 20S proteasome beta subunit D1 (.1) Lus10042145 [exp] 47 / 7e-06 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145900 [exp] 333 / 4e-115 AT4G31300 405 / 3e-145 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.006G077900 [exp] 333 / 4e-115 AT4G31300 416 / 2e-149 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.006G278900 [exp] 183 / 5e-57 AT2G24390 194 / 4e-64 AIG2-like (avirulence induced gene) family protein (.1), AIG2-like (avirulence induced gene) family protein (.2), AIG2-like (avirulence induced gene) family protein (.3) Potri.018G003000 [exp] 181 / 2e-56 AT2G24390 191 / 8e-63 AIG2-like (avirulence induced gene) family protein (.1), AIG2-like (avirulence induced gene) family protein (.2), AIG2-like (avirulence induced gene) family protein (.3) Potri.017G071100 [exp] 100 / 3e-24 AT5G40580 497 / 1e-180 20S proteasome beta subunit PBB2 (.1.2.3) Potri.004G066000 [exp] 99 / 2e-23 AT3G27430 495 / 1e-179 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.008G177000 [exp] 76 / 1e-15 AT3G26340 473 / 7e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.010G058100 [exp] 76 / 3e-15 AT3G26340 463 / 6e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.016G015400 [exp] 50 / 7e-07 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.006G008800 [exp] 47 / 7e-06 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0278 [flax] [poplar] AIG2 PF06094 [flax] [poplar] GGACT Gamma-glutamyl cyclotransferase, AIG2-like
Representative CDS sequence Show only first row Show all	>Lus10026984 pacid=23142878 polypeptide=Lus10026984 locus=Lus10026984.g ID=Lus10026984.BGIv1.0 annot-version=v1.0 ATGGATACGTGTATCAGCGATCTGAATGCTCCCCACTCGATGGGCACCACCATCATCGGCGTCACCTATAACGGCGGCGTTATTCTCGGCGCAGATTCCC GGACCAGCACCGGAATGTATGTTGCTAACAGGGCTTCGGACAAGATTACCCAGCTCACTGATAACGTCTACGTCTGTCGCTCTGGATCGGCTGCAGATTC CCAGATTGTTTCTGACTATGTCCGATACTTTTTGCATCAACACACAATACAATTAGGACAGCCTTCAACTGTCAAGGTTGCTGCAAACCTTGTCCGCCTA TTGTCATACAATAACAAGAACAATCTACAAACTGGTCTCATCATTGGTGGATGGGACAAGTATGAAGGTGGGAAAATTTATGGAGTCCCTCTTGGTGGAA CGTTGGTAGAGGCACCCTTTGCTATTGGAGGATCTGGTTCCAGTTACTTGTATGGGTTCTTTGATCAAGTTTGGAAAGATGGCATGACTAAAGAGGAAGC AGAGCAATTAGTGGTGAAGGCAGTTTCCCTAGCCATTGCAAGAGATGGTGCAAGTGGCGGTGTTGTCCGCACTGTGGTTGTGTTCGTGCGACTCTCTTAC ACCCAATTACACTTAGCCATTGGTGAGGCCAAGCTCCAGGAGATTGACGAGATTCATAGGTTCAGCATAAAAGGGAGGGTTTATCCTGCCATTCTACCCA TTGATAACAAGAGGATTCAGGGCAAAGTCCTGTTTGGGATTACCGATCCTGAACTACTGGTTCTCGATATCTTCGAGGATGTTGAGTATGAGCGTCGCAC TGTCCAAGTTTCCCTCCCGGAGGAGGAGAAGAAGCTAGAAGTGTATGCCTATGTTTGGGGAAACAAGGACGATCCTGACTTGTGTGGAGAATGGGATTTT GAGGAGTGGAAGAAAGCACACATGAGTGATTTTGTGAAGATGACAGCAGAATTCATGGAAGAATTACAGCAACCAGATTCAAAGACGAGAGTGGCGACCT ACGAATCTTACTATAACACAACACTAGTTACCACCGATAGTGCTTCTACCGAGCCTTGA
AA sequence Show only first row Show all	>Lus10026984 pacid=23142878 polypeptide=Lus10026984 locus=Lus10026984.g ID=Lus10026984.BGIv1.0 annot-version=v1.0 MDTCISDLNAPHSMGTTIIGVTYNGGVILGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPSTVKVAANLVRL LSYNNKNNLQTGLIIGGWDKYEGGKIYGVPLGGTLVEAPFAIGGSGSSYLYGFFDQVWKDGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVVVFVRLSY TQLHLAIGEAKLQEIDEIHRFSIKGRVYPAILPIDNKRIQGKVLFGITDPELLVLDIFEDVEYERRTVQVSLPEEEKKLEVYAYVWGNKDDPDLCGEWDF EEWKKAHMSDFVKMTAEFMEELQQPDSKTRVATYESYYNTTLVTTDSASTEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	0	1
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	1.0	0.7971
AT3G18940			clast3-related (.1)		Lus10021018 [exp]	2.8	0.6740
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	4.5	0.6869
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034308 [exp]	4.9	0.6596
AT3G07640			unknown protein		Lus10036423 [exp]	8.3	0.6775
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10017619 [exp]	11.2	0.6231
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	12.4	0.6342
AT2G32980			unknown protein		Lus10035310 [exp]	17.9	0.6238
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	19.3	0.6641
AT4G31890			ARM repeat superfamily protein...		Lus10013459 [exp]	22.2	0.6237

Compare expression of checked genes

Lus10026984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.