Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31290 331 / 7e-116 ChaC-like family protein (.1) AT5G26220 319 / 4e-111 ChaC-like family protein (.1) AT1G44790 181 / 7e-57 ChaC-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020181 [exp] 489 / 6e-178 AT4G31290 342 / 2e-120 ChaC-like family protein (.1) Lus10003737 [exp] 179 / 8e-56 AT1G44790 275 / 2e-94 ChaC-like family protein (.1) Lus10028029 [exp] 166 / 2e-50 AT1G44790 257 / 4e-87 ChaC-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002900 [exp] 345 / 2e-121 AT4G31290 332 / 1e-116 ChaC-like family protein (.1) Potri.006G279000 [exp] 333 / 2e-116 AT4G31290 327 / 5e-115 ChaC-like family protein (.1) Potri.005G176300 [exp] 190 / 1e-60 AT1G44790 289 / 9e-101 ChaC-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [flax] [poplar] AIG2 PF04752 [flax] [poplar] ChaC ChaC-like protein
Representative CDS sequence Show only first row Show all	>Lus10026985 pacid=23142830 polypeptide=Lus10026985 locus=Lus10026985.g ID=Lus10026985.BGIv1.0 annot-version=v1.0 ATGGTGTTCTGGATCTTTGGCTATGGCTCATTGGTGTGGAACCCTGGTTTTGAGTACGATGAGAAGATCATAGGCTTCATCAAAGATTACAGGCGTGTAT TTGACCTCGCGTGCATTGACCATAGAGGTACACCCGAACATCCTGCCAGAACTTGCACATTGGAGAATGTTGAAGGAGCCATTTGCTGGGGTGCTGTTTA TTGCGTTCGGGGCGGTCCAGAAAAAGAGAGGTTGGCAATGGAGCAACCAACTGCGCTTAGAATGAACGCTTACTTGATTGATTTGTTCTTGCATGTGTTT CAGTACCTGGAGCGAAGAGAGTGCGAATATGATATGAAGACTCTTGTGAACTTCTACAGGGAAGATGATCCCTCTCAACCTGCAATAACGGATGTTATAG TTTTTACCTCTACAGCAGACAAAGTATCAAACAAGTACTACCTTGGGCCGGCTCCTTTGGAGGAAATGGCTTTGCAAATCGCAACCGCATTTGGTCCATG TGGGAATAATAGAGACTACCTCTTTCTGCTAGAGAAGGCCATGTTCGATATAGGACATGAAGAGGAAATGGTGATCGAGTTGGCAAATGAAGTGAGAAAG GTTCTTGGAAAAGGGATTTCCCAGGACAGAAAGACAATAGTAAAGCCATCTCGAAAGGCAACCCCAGCAGAAGAGAATCGGAAGGTACAGAAGGCAACTT CAGGGAAAGATGTCTTGAACAAGTCTTCTATAGGCTCGCTTGTCCAACAACCACTTCACGATTCTGGTGTTGTCTGTGGCAGTTTAGCTTGA
AA sequence Show only first row Show all	>Lus10026985 pacid=23142830 polypeptide=Lus10026985 locus=Lus10026985.g ID=Lus10026985.BGIv1.0 annot-version=v1.0 MVFWIFGYGSLVWNPGFEYDEKIIGFIKDYRRVFDLACIDHRGTPEHPARTCTLENVEGAICWGAVYCVRGGPEKERLAMEQPTALRMNAYLIDLFLHVF QYLERRECEYDMKTLVNFYREDDPSQPAITDVIVFTSTADKVSNKYYLGPAPLEEMALQIATAFGPCGNNRDYLFLLEKAMFDIGHEEEMVIELANEVRK VLGKGISQDRKTIVKPSRKATPAEENRKVQKATSGKDVLNKSSIGSLVQQPLHDSGVVCGSLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31290			ChaC-like family protein (.1)		Lus10026985 [exp]	0	1
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	17.3	0.8553
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10029114 [exp]	21.2	0.8003
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	43.1	0.8369
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	48.9	0.8438
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040858 [exp]	87.3	0.8066
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10019712 [exp]	91.1	0.8045
AT1G50700		CPK33	calcium-dependent protein kina...		Lus10001146 [exp]	95.5	0.8083
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	131.8	0.7954
AT2G23290	MYB	ATMYB70	myb domain protein 70 (.1)		Lus10021762 [exp]	137.1	0.7739
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10001775 [exp]	175.5	0.7869

Compare expression of checked genes

Lus10026985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.