Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31270 139 / 1e-37 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G33550 63 / 1e-10 Trihelix Homeodomain-like superfamily protein (.1) AT2G35640 43 / 0.0003 Trihelix Homeodomain-like superfamily protein (.1) AT1G31310 42 / 0.0008 Trihelix hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020182 [exp] 615 / 0 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1) Lus10041120 [exp] 111 / 3e-27 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1) Lus10036449 [exp] 49 / 4e-06 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10028584 [exp] 43 / 0.0006 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10027398 [exp] 42 / 0.0009 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002801 [exp] 138 / 5e-36 AT4G31270 154 / 4e-43 sequence-specific DNA binding transcription factors (.1) Potri.006G279100 [exp] 133 / 3e-34 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.015G105800 [exp] 64 / 5e-11 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 61 / 7e-10 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1) Potri.001G066900 [exp] 58 / 5e-09 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1) Potri.012G117500 [exp] 47 / 2e-05 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.012G132300 [exp] 46 / 6e-05 AT5G51800 866 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026986 pacid=23142874 polypeptide=Lus10026986 locus=Lus10026986.g ID=Lus10026986.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCCGAACCAATTAGCGACAGGGAGAGTTCCTTAGAGCCGAAACGGAGAGGCAAGAATCCGGAGCCGGAATCGAAAGGTGCTGACGTGGCGG AGGAGGAGGATGAGGTTATGCCGGCAGATCGGACGACCACCCGCATGACGCGCTCTAGGGCGAGTCCTGACTGGACGACCAAGGAATCTTTAATTCTGGT GAACGTGATCGTTGCAATTGATGGAGACTGGCTGAGAGTCTTGTCATCCCACCAAAAATGGAAGTCCGTAGCAGATAACTGCAACTTGTTGGACGTTCGC CGGAATTTGTACCAGTGCCGGGAGAAGTGGAGGTCGCTGCTCTCGGAGTACCATCGCATCAAGCAGTGGAATTCTAAGGCAGGTGATGAGGGGCGTGATC CGCCGTACTGGAGTTTGGACCGGGAGAAGAGAAAACTCTTGGAATTGCCTCCAAGTTTCGATTATGAAGTGTTCAAAGCTATTGATACATACTTTAGCAC CAAGCGGGAGGAGCTGGACAGCGATACAGATACTGATCCTGAAGCTGATGCTGAGTTGCTCGAAGTCATCGCAAAGCTAGAAGTTGGTCTTGGTCATATT GAGCCATTGTTTCCAGGGTCCAAGTCCAAGCGAAGAAAACGTTGTAGAGCTGTTCTGGAAAAAGAAGAAGGATTGCCAGAAGAGTTATCTCGACCATGTT CGCCCGAGGAAAAGCCTCCGACATATGACTTGGGCGAGAACCCAGAGGAAAGTCGTGTGGGAGAAACGCATCCAGAAGAGGGACATACACATGAAACATG TGAACCCGAGGAGGAGGAACATACTGATGAAACATGTGAACCCGAGGAGGAGGAACATACAGATGAAACTTGTGAACCTGAGGAGGAACATGAACAAACA AGTGACAAGAACGTGGCCATAAAAGATGAGGAAGTTCATGAAAGTCATGTTGAAGAAGGCATCCCGCAGGAGATCCCTGAAGAAGGCGACAAGAACGGAG CAGCTCGAGAAGGGATCAGCGGGGAGCGGAAGGCTCAGAGCTATGAGAGTGTAACCACCACGCCGTCGGAAGGGGAAAAGGGTCTTAGCCAGGGGGTAGT GAGGCCGTACAAAAGAGGCCGGAAGCCGAAAGCACTAGTGGAAGAAGAGAAGATGGTGGAGCAAGTGTTGGAGAACTCGCAATTGGTGCTGTCTGTAGCT ACAGGGAGTTATCCTCGCGAGACTGAAACAACAGGCGATCATTTGAAGGATGGAGAAGGATCTTCTGAAAGGGAGTTTGTACGATATCAAGCAGACAAAC TTGTGGAATGCCTGGGTCGGATTGTAAATATACTTGGCAGGCATCCTTATCTGGTCGAAAAATATAGCTAA
AA sequence Show only first row Show all	>Lus10026986 pacid=23142874 polypeptide=Lus10026986 locus=Lus10026986.g ID=Lus10026986.BGIv1.0 annot-version=v1.0 MEEAEPISDRESSLEPKRRGKNPEPESKGADVAEEEDEVMPADRTTTRMTRSRASPDWTTKESLILVNVIVAIDGDWLRVLSSHQKWKSVADNCNLLDVR RNLYQCREKWRSLLSEYHRIKQWNSKAGDEGRDPPYWSLDREKRKLLELPPSFDYEVFKAIDTYFSTKREELDSDTDTDPEADAELLEVIAKLEVGLGHI EPLFPGSKSKRRKRCRAVLEKEEGLPEELSRPCSPEEKPPTYDLGENPEESRVGETHPEEGHTHETCEPEEEEHTDETCEPEEEEHTDETCEPEEEHEQT SDKNVAIKDEEVHESHVEEGIPQEIPEEGDKNGAAREGISGERKAQSYESVTTTPSEGEKGLSQGVVRPYKRGRKPKALVEEEKMVEQVLENSQLVLSVA TGSYPRETETTGDHLKDGEGSSEREFVRYQADKLVECLGRIVNILGRHPYLVEKYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	0	1
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	1.0	0.8611
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	2.4	0.8393
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	3.5	0.8262
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	3.9	0.8256
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	4.2	0.8087
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	6.0	0.7990
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	6.5	0.8171
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	6.9	0.8175
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	8.7	0.8278
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	9.8	0.7832

Compare expression of checked genes

Lus10026986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.