Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35390 163 / 8e-47 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 139 / 2e-38 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 136 / 3e-37 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT4G31250 132 / 1e-35 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 127 / 4e-34 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 124 / 1e-32 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 110 / 5e-28 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 104 / 7e-26 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 103 / 1e-25 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 95 / 2e-22 RKL1 receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026988 [exp] 286 / 1e-93 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 271 / 1e-87 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 148 / 3e-41 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 147 / 3e-41 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 142 / 5e-39 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 137 / 7e-38 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 137 / 2e-37 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027645 [exp] 122 / 4e-34 AT1G72460 211 / 8e-64 Leucine-rich repeat protein kinase family protein (.1) Lus10037687 [exp] 110 / 2e-29 AT1G72460 212 / 4e-64 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002700 [exp] 167 / 2e-48 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 160 / 6e-46 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 159 / 1e-45 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 149 / 5e-42 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 149 / 1e-41 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 147 / 6e-41 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 129 / 2e-34 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 121 / 8e-32 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 97 / 2e-23 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 96 / 6e-23 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026987 pacid=23142814 polypeptide=Lus10026987 locus=Lus10026987.g ID=Lus10026987.BGIv1.0 annot-version=v1.0 ATGATCATTCCCTCCATCTTCCTCCTCATCTTCATATCCTCCTCCTCATCATCCGCCCACCAAATCGAGGTAGAAGCACTCCTCAACTTCAAAAAATCAC TCTCCAACGCATCCGCCACTCTACAGAGCTGGAACGCCACTCTCTCCCCACCTTGCAACCGTGACGACTTCGTCTGGACGGGCCTCCAGTGCGACAGAGG ATCCGTCGAGAAGCTGATCCTCGATGGAATCGGACTCTCTGGGATCATCGACGTTGACTCCCTAGCCAACCTTCCCAGCCTCAGGACGTTCAGCATCATG GCCAATAACTTCGACGGTCCCATTCCGGATTTTACTAAGCTTCCCTTGAAGAATCTCTACCTTTCCGGGAACCGATTCTCCGGCAGTATTCCGGACGATG CTTTCCGAGGGATGAATTCGCTCAACGAGATTTACCTTGCCAATAACCGGTTCGTGGGGCCGATTCCCGAGTCGATTCTCGGATTGAAGAAACTGACCGA GTTGAGCTTGGAAAGGAATCAGTTCACCGGTTCTATACCGGATTTTCAGCAGCAGTTTACTGTCATTAACGTCTCCGGGAATCAGTTGGTGGGTCCCGTT CCGGAAAGCCTTTAG
AA sequence Show only first row Show all	>Lus10026987 pacid=23142814 polypeptide=Lus10026987 locus=Lus10026987.g ID=Lus10026987.BGIv1.0 annot-version=v1.0 MIIPSIFLLIFISSSSSSAHQIEVEALLNFKKSLSNASATLQSWNATLSPPCNRDDFVWTGLQCDRGSVEKLILDGIGLSGIIDVDSLANLPSLRTFSIM ANNFDGPIPDFTKLPLKNLYLSGNRFSGSIPDDAFRGMNSLNEIYLANNRFVGPIPESILGLKKLTELSLERNQFTGSIPDFQQQFTVINVSGNQLVGPV PESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35390			Leucine-rich repeat protein ki...		Lus10026987 [exp]	0	1

Compare expression of checked genes

Lus10026987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.