Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31250 553 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 520 / 3e-177 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 493 / 1e-166 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 358 / 1e-114 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT1G50610 342 / 3e-108 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 293 / 5e-90 RLK902 receptor-like kinase 902 (.1) AT5G58300 283 / 6e-86 Leucine-rich repeat protein kinase family protein (.1.2) AT5G20690 262 / 3e-78 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 261 / 6e-78 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 257 / 1e-76 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020183 [exp] 1081 / 0 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 404 / 1e-131 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 372 / 5e-122 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 360 / 1e-119 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 355 / 3e-113 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 351 / 2e-111 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 345 / 1e-108 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 320 / 6e-102 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 317 / 6e-100 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002600 [exp] 672 / 0 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 642 / 0 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 558 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 554 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 545 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 541 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 370 / 5e-123 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 359 / 4e-115 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 356 / 5e-114 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 298 / 4e-92 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026988 pacid=23142816 polypeptide=Lus10026988 locus=Lus10026988.g ID=Lus10026988.BGIv1.0 annot-version=v1.0 ATGATCATTCCTCCCGCCAAATCCTTCATCTTCCTCATCCTCCTCATCACATCCTCCTCCTCACCATGTAATTTCTCCGCCGCCGCCGCCGCAGACGAGG CGGAAGCACTTCTCAACTTCAAAAAATCACTCTCCAACGCATCCGCCGCTCTACAGAGCTGGAACGCCACCCTCTCCCCGCCGTGCAACCGCGACGATTC TACCTGGACGGGCCTCCGCTGCGACAGGGGATCCGTTGAGAAGCTCATCCTCGACGGAATCGGAATCTCCGGGATTATCGATGTAGAATCCCTTGCCAAA CTTCCCAGTCTGAGGACGTTCAGCGTCATGGGGAATGGCTTCCAAGGTCCGATCCCGGCTTTGACTAAGCTTCCATTGAAGAATCTCTACCTTTCCGGGA ACAGATTCTCCGGCGGGATTCCGGAGGATGCTTTCCGAGGGATGAATTCGATCAAGGAGGTTTATCTTGCCAATAACCGGTTCGTGGGGCCGATTCCTGG GTCGATTCTCGGGTTGAAGAAACTGACCGAGTTGAGCTTGGAAGGGAATCAGTTTACCGGTTCTATACCGGATTTTCAGCAGCAGCTTACTGTGTTTAAC GTCTCCGGGAATCAGTTGGTGGGTCCCATTCCGGAAAGCCTTGGCGCCAAATTCGACCAGTCTTCTTTTTCCGGGAACAAAGGGCTGTGCGGGAAGCCGC TGCCGCCATGCAATTTGGAAGAGGCGAAAGGGAAACCAAAGGCAAAGACAAAGACAATCCTAATCATCGTTGCAGTTATCGCCATACTACTGATACTAAC TGCCATTATCGCCTGCACATTCATTCGAGACCGTGGATCCAAATCTGCAAACCGAGCCCAATTAAAGCAATACAACGACACAAAAGACCTCAAGAAATTC GGAGCGCAAAGCCCAATCCGCCCAAATACCCAGGCCCATAAGACGGAGGAGGCAGCGATGGCAGGAGGAGGGGGGAGAGGGGAGAATGGGAAGCTCAAGT TTGTGAGGAACGATAGATCAGAGACGTTTGATCTGCAGGAGCTTCTCAGGTCGTCGGCGGAGGTTCTCGGAAGCGGGACGTTTGGGTCTTCGTACAAGGC GGTGCTGCCGGAAGGGCCTGCCATGGTGGTGAAGAGGTTTAGGCAGATGGATAGCGTTGGCAAGGAGGAGTTTTATGAACATATGAAGAGGCTTGGCACA TTGTCACATCCAAACTTGTTACCACTAGTGGCCTTCTATTACAGGAAGGAAGAGAAGCTTTTGGTGTCTGATTTCGCTCACAATGGTAGCCTTGCTACTC ATCTCCACGAAAAGAGACGATCAGGGGAGCCAGGTCTGCCATGGCCAACACGGTTGAAGATAATCAAAGGAGTAGCAAAGGGACTAGGCTATCTTTACAA ACAACTCCCCGATTTGCCACTACCACACGGACATTTGAAATCCTCAAACATCCTGCTCGACCACACCTTCCAACCTCTGCTCACCGATTACGCCCTCTCC CCAGTCGTAAATCCAGATCAAGCTCAATCCGTGATGGTGGCTTACAAGTCCCCGGAGTTCATCCAAACGGGACGCACATCTACCAAGACCGATGTCTGGA GCCTAGGGATCCTGATCCTGGAGGTCCTAACAGGGAAATTCCCTGCGAACTACCTTCTCCGGCAAGGGAAAGGAGGAGGAGATCAGGCGTCGACGAACGC AGATCTGGCGGCGTGGGTGAACTCGGTGGTGAGGGAGGAGTGGACCGGAGAGGTGTTCGATAAGGAGATGAAAGGGACGAAGAACGGCGAAGGGGAGATG TTGAAGCTGCTTAAGATCGGGATGTGCTGCTGCGAGTGGAACGTGGAGCGGCGGTGGGGGTTGACGGAGGCGGTGGTGAGAATTGATGAGCTGAAGGAAA AGGAAGAAGAAGGGAATGAGGATTATTGCAGCTCGATTGGGAGCGATGGGGATCTGTACTCTTCCAGGGCTATGAATGAGAATGAATTCTCCTTCTCCAT CACTGCCTGA
AA sequence Show only first row Show all	>Lus10026988 pacid=23142816 polypeptide=Lus10026988 locus=Lus10026988.g ID=Lus10026988.BGIv1.0 annot-version=v1.0 MIIPPAKSFIFLILLITSSSSPCNFSAAAAADEAEALLNFKKSLSNASAALQSWNATLSPPCNRDDSTWTGLRCDRGSVEKLILDGIGISGIIDVESLAK LPSLRTFSVMGNGFQGPIPALTKLPLKNLYLSGNRFSGGIPEDAFRGMNSIKEVYLANNRFVGPIPGSILGLKKLTELSLEGNQFTGSIPDFQQQLTVFN VSGNQLVGPIPESLGAKFDQSSFSGNKGLCGKPLPPCNLEEAKGKPKAKTKTILIIVAVIAILLILTAIIACTFIRDRGSKSANRAQLKQYNDTKDLKKF GAQSPIRPNTQAHKTEEAAMAGGGGRGENGKLKFVRNDRSETFDLQELLRSSAEVLGSGTFGSSYKAVLPEGPAMVVKRFRQMDSVGKEEFYEHMKRLGT LSHPNLLPLVAFYYRKEEKLLVSDFAHNGSLATHLHEKRRSGEPGLPWPTRLKIIKGVAKGLGYLYKQLPDLPLPHGHLKSSNILLDHTFQPLLTDYALS PVVNPDQAQSVMVAYKSPEFIQTGRTSTKTDVWSLGILILEVLTGKFPANYLLRQGKGGGDQASTNADLAAWVNSVVREEWTGEVFDKEMKGTKNGEGEM LKLLKIGMCCCEWNVERRWGLTEAVVRIDELKEKEEEGNEDYCSSIGSDGDLYSSRAMNENEFSFSITA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31250			Leucine-rich repeat protein ki...		Lus10026988 [exp]	0	1
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	4.9	0.7253
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	12.3	0.6730
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10040456 [exp]	13.0	0.6689
AT2G34050			unknown protein		Lus10020428 [exp]	16.9	0.6504
AT1G11440			unknown protein		Lus10007616 [exp]	24.0	0.6782
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	27.6	0.6407
AT3G24100			Uncharacterised protein family...		Lus10007122 [exp]	30.2	0.6575
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013171 [exp]	33.2	0.5982
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	37.9	0.6685
AT2G44600			unknown protein		Lus10043351 [exp]	38.3	0.6472

Compare expression of checked genes

Lus10026988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.