Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 924 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 848 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 711 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 705 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 681 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 647 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 598 / 0 protein kinase family protein (.1) AT5G12000 535 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 463 / 5e-152 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 452 / 4e-148 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020185 [exp] 971 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 761 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 746 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 724 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 692 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 670 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 603 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 567 / 0 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 531 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002400 [exp] 919 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 750 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 714 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 696 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 696 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 595 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170901 [exp] 518 / 3e-175 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 519 / 1e-173 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 496 / 9e-164 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 357 / 6e-112 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10026989 pacid=23142906 polypeptide=Lus10026989 locus=Lus10026989.g ID=Lus10026989.BGIv1.0 annot-version=v1.0 ATGTGGATGCCAAGAACATCAACAACAACAGCAGAAAGGAAGGAAGCAGGGAATGGAGTGGTGGCTGTGGCAATAGACAAGGACAAAACAAGCCAAGCTG CTCTCAAATGGGCTATAGACACCATTCTCCAAAGGGGTCAAACCCTCATTCTCATCCATGTCAAGCTTAAGCCTCAATCCTCCTCCACTTCTGCTCCTCG AATGAATCAAGTCGTTGATGCTAACGGTGAAAGCCCGTTGGTATGCAAAAATCCTGACGCGGCAACCAAAGACATGTTCTTGCCTTTTCGATGCTTCTGC ACCCGTAAAGATATTCAATGTCAAGACATAGTATTGGAAGATTCAGATGTAGCGAAAGCATTGACCGAGTATGCCACTCAGATGGCCATCGAGACTTTGG TATTGGGCGCCACTTCAAAAGGTGGCTTTCTCAGATTCAGGGCGACTGACATACCAGCAACTGTGTCCAAAGGGGCACCTGATTTTTGTACAGTGTATGT GATTTCCAAAGGCAAAATCCAGTCTGCAAGATCTGCTTCCCGTCCTGCACCTGCCATCTCTCCTTTCCGCAACATCTCTAGCCAACCCAGCATCAAGCCC AATGTATCTGAACCTCCAGCTGCTGCTCAACAAGCACCTACCAAACGTATTGAGAGGCCACCAATTGAGCAACCGCGAAGATCAGTTGATCAGCAGCAAC CGCGGAGATCAATTGATCAACAAAGAAGATCAACTGATGGTACTACCGATTTTTTCAGGTCTCCATTGACTAGAAATGCTGCAAATGCAAAAGCATACGG TGAATTAAGACTACCAGACACTGATATATCATTTGTAAGCTCCGGAAGGCCAAGCATTGATCGAATGTTCCCAGGTTACTATGATAACAACGCTGCCTCC TCGGAGGGTGGGCGACCCCCACGCTTATCGAACGTTTCGGATTTCGAAAATGATCTGATGAATAGCTTTGAGTCGATGCAACAACAGCATGCAGGTAGGA GGTCACTAGATATCACCTCCTCTCCAAGACTATCCTCTGTCTCCCAGGAGAATGAAAGGCTCTCTTCAGTATCTCAATCTATGGACGACGTGGAAGCTGA AATGAGAAGGCTAAAGCAGGAGGTTAAGCAAACAATGGAAATGTACAACGCAGCATGCAAAGAAGCACTTGCAGCAAAACACAAGGCAAAAGAGCTAGCA CAGTTGAAAGCAGAAGAAGAGAGAAAGCTGGAAGAAGCGAGATTGGCAGAGGAAACTGCTTTGGCGATAGCAGAGAGTGAGAAAGCTAAGACGAAAGCTG CGATAGAGGCTGCAGAGGCAGCACAGAGGATAGCAGAGGTAGAGGCTCAAAAGAGAATTAGTGCAGAGATGAAAGCTCGTCAAGAAGCTGAAGAGAAGCA AAAGGCACTGGACACCATCATGCATTCTGATGTTAGGTACAGAAAGTACTCAATCGAAGAGATCGAAGTCGCCACTGAGAATTTCTCAGACAGCCGGAAA ATTGGAGAAGGGGGTTATGGTCCTGTGTATAGGTGCTATCTTGATCATACCCCTGTCGCCATTAAGGTCCTACGTCCTGATGCTGCTCAAGGAAGGTCCC AATTTCAACAGGAGGTTGAGGTGTTGTGTTGCATAAGGCACCCAAACATGGTTCTACTGCTAGGAGCCTGCCCAGAATACGGATGCTTAGTCTACGAATA CATGGCCAATGGAAGCTTAGACGACCGTCTATTCAGGAGAGGCAACACACCTCCTCTTTCATGGCAGCAAAGGTTCCTAATTGCAGCGGAGATCGGAACC GGATTGCTATTCCTCCACCAAACCAAACCCGAACCCTTAGTTCATCGCGATCTCAAACCGGGAAACATCCTCCTGGATCGCAACTTTGTGAGCAAGATCA GCGACGTTGGACTCGCAAGGCTGGTCCCGCCAGCGGTGGCAGACAGCGTGACGCAGTACAGAATGACGTCGACGGCTGGAACGTTCTGCTACATAGACCC CGAGTACCAGCAGTCAGGAATGCTAGGGGTAAAATCCGACATTTACTCGTTGGGCATAATGTTCTTGCAGATAATAACAGGGAAGCCGCCGATGGGACTG ACGCACCATGTTGATAGAGCGATAGAGAAGGACACGCTTTCTCAGATGCTGGATCCTGCTGTACCGGATTGGCCCCTGGAGGAAGCTAAGCAGTTTGCTG AGCTGGCGTTGAAATGTGCGGAGCTTAGGCGGAAAGATCGGCCGGATTTGGGGAAGGTGGTGTTGCCGGAGCTGAACCGGTTTAGAATCATGGCGGAGGA GAGTATACAGCGGCAGGAGCAGCTTCCGTATTTCGCTGGGAGTTTCGTGCATTCTGGTAAAGCTTCTCAGGTTTCTTCTCTTAAACTTAATGAACCTGCT TCTGTATAG
AA sequence Show only first row Show all	>Lus10026989 pacid=23142906 polypeptide=Lus10026989 locus=Lus10026989.g ID=Lus10026989.BGIv1.0 annot-version=v1.0 MWMPRTSTTTAERKEAGNGVVAVAIDKDKTSQAALKWAIDTILQRGQTLILIHVKLKPQSSSTSAPRMNQVVDANGESPLVCKNPDAATKDMFLPFRCFC TRKDIQCQDIVLEDSDVAKALTEYATQMAIETLVLGATSKGGFLRFRATDIPATVSKGAPDFCTVYVISKGKIQSARSASRPAPAISPFRNISSQPSIKP NVSEPPAAAQQAPTKRIERPPIEQPRRSVDQQQPRRSIDQQRRSTDGTTDFFRSPLTRNAANAKAYGELRLPDTDISFVSSGRPSIDRMFPGYYDNNAAS SEGGRPPRLSNVSDFENDLMNSFESMQQQHAGRRSLDITSSPRLSSVSQENERLSSVSQSMDDVEAEMRRLKQEVKQTMEMYNAACKEALAAKHKAKELA QLKAEEERKLEEARLAEETALAIAESEKAKTKAAIEAAEAAQRIAEVEAQKRISAEMKARQEAEEKQKALDTIMHSDVRYRKYSIEEIEVATENFSDSRK IGEGGYGPVYRCYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDRLFRRGNTPPLSWQQRFLIAAEIGT GLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPAVADSVTQYRMTSTAGTFCYIDPEYQQSGMLGVKSDIYSLGIMFLQIITGKPPMGL THHVDRAIEKDTLSQMLDPAVPDWPLEEAKQFAELALKCAELRRKDRPDLGKVVLPELNRFRIMAEESIQRQEQLPYFAGSFVHSGKASQVSSLKLNEPA SV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	0	1
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	1.0	0.9180
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	2.4	0.9005
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	2.8	0.8998
AT3G24630			unknown protein		Lus10043221 [exp]	5.5	0.8703
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	5.7	0.8999
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	9.5	0.8775
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	9.5	0.8866
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	9.5	0.8899
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	10.5	0.8768
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	13.7	0.8609

Compare expression of checked genes

Lus10026989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.