Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31210 654 / 0 DNA topoisomerase, type IA, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020186 [exp] 941 / 0 AT4G31210 1196 / 0.0 DNA topoisomerase, type IA, core (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279700 [exp] 709 / 0 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1) Potri.005G067100 [exp] 56 / 4e-08 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01131 [flax] [poplar] Topoisom_bac DNA topoisomerase CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01396 [flax] [poplar] zf-C4_Topoisom Topoisomerase DNA binding C4 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10026990 pacid=23142956 polypeptide=Lus10026990 locus=Lus10026990.g ID=Lus10026990.BGIv1.0 annot-version=v1.0 ATGTTGGTGTTATTTAGATCAGGTACTTTGAAGATTGTTTTTAGTAATCGCACAAGGTATGGCCCGGGTTTTGCTTCAGAGAGTGTCCGAAAGTATTTTA AGAAGGTTAAGAATGCTCAAGAGGCACATGAAGCAATCAGACCCACTGACATGAAGATTTCCCCTTCAATGCTTGCTGGTATTCTTGACGAAGATGCCTT GAAGTTGTACACTCTTATCTGGTCTCGCACTTTGGCTTGCCAAATGGAGCCTGCTATAATCGAACAGTTGCAAGTAGACATTGGAAATGCTAGCAAGTCA ATCGTCTTCAGGTCTACGTGTTCAGGGCTTGGATTTCCTGGCTACCAGGCAGTGTATCAGGATGTTGAAACTAAAGCTTTAAGAGGGAAGGAAGATGAAG AGGACGAATATAAAGCAGTTTTTGGGATTCTTAATTCACTGAAGGCAGGGAACCCAGTGTTTATTGCTGCAGTTGAATCCAAGCAGCACTTTACTCAGCC TCCACCACGATATTCTGAAGCATCATTGATTAAGAAGCTGGAGGAACTTGGGATCGGAAGGCCTTCAACTTATGCCAGCACATTAAAAGTCTTGCAGGAC AGGAAATATGTGACCGTGAAAAGTCGTGTTATGAACCCAGAATTTCGTGGTCGAATGGTCTCTGCATTTCTTTCCAACTATTTCACGGAGGTCACAGATT ACAGCTTCACTGCTGACATGGAGACTGAGCTTGATAATGTTTGTGCTGGACTTACTGAATGGAAAGGTCTTCTCAGAGATTATTGGACACGATTTAGTTC CTATTGCAGTGGTACTGAGAATGTCCACATCCATCAGGTGGAGAAGATGTTAGAGAAAAAGTTTGGAGACCTTTTGTTTGGCTCACTCCGTTCTGATACC AGAACATGCCCCAGTTGTATGGAGGGCACGTTGATTTTCAAAGTTAGTCGATATGGTGCAGGCTACTTCATTGGCTGTGATCAGCATCCATCGTGCAAGT ATATTGCTAAGACATTGCTGGCGAATGAAGAAGAAGAAGAAGAAGAAGAAGCTCCCAAGAGCAATCATGTTCTCGACGAACCAAAAGTATTAGGTGTTCA TCCCGTTTCAAAGGAAAAGATTTTAATGAAGAAAGGTCCATATGGATTCTACGTACAACTCGGGGAAGATAGGAAGGACTACATTCCTAAAAGAACATCC CTTTCCCATGTAAAGGATGTCGATGCCGTTACACTGGAAGAGTCTCTGAAGTTGTTGCGCTACCCAATGACACTGGGGAACCATCCCAAGGATGGACATC CTATACTATTAAAGCTTACGAAGAATGGGTTTTCTGTTAGACATCGACGCACAATTGCTTCTGTTCCCAAGAACGTAGACCCAGATGATATAACCGTTGA GAAAGCAATGGCGTATTTATCAAGTAAAGATGTAAGAAGAAGTGGCCGACCCAAAGGTGTAGCCAAGGTTGAAGCAGCAACAGCAGTGGAAGCAGCTAGC TAA
AA sequence Show only first row Show all	>Lus10026990 pacid=23142956 polypeptide=Lus10026990 locus=Lus10026990.g ID=Lus10026990.BGIv1.0 annot-version=v1.0 MLVLFRSGTLKIVFSNRTRYGPGFASESVRKYFKKVKNAQEAHEAIRPTDMKISPSMLAGILDEDALKLYTLIWSRTLACQMEPAIIEQLQVDIGNASKS IVFRSTCSGLGFPGYQAVYQDVETKALRGKEDEEDEYKAVFGILNSLKAGNPVFIAAVESKQHFTQPPPRYSEASLIKKLEELGIGRPSTYASTLKVLQD RKYVTVKSRVMNPEFRGRMVSAFLSNYFTEVTDYSFTADMETELDNVCAGLTEWKGLLRDYWTRFSSYCSGTENVHIHQVEKMLEKKFGDLLFGSLRSDT RTCPSCMEGTLIFKVSRYGAGYFIGCDQHPSCKYIAKTLLANEEEEEEEEAPKSNHVLDEPKVLGVHPVSKEKILMKKGPYGFYVQLGEDRKDYIPKRTS LSHVKDVDAVTLEESLKLLRYPMTLGNHPKDGHPILLKLTKNGFSVRHRRTIASVPKNVDPDDITVEKAMAYLSSKDVRRSGRPKGVAKVEAATAVEAAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	0	1
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	2.0	0.9434
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	2.4	0.9324
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	2.8	0.9308
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	4.0	0.9364
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10028211 [exp]	4.5	0.9065
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029134 [exp]	5.7	0.9055
AT1G73020			unknown protein		Lus10000526 [exp]	7.9	0.8905
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10010344 [exp]	8.2	0.8559
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	8.9	0.9295
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10015847 [exp]	9.2	0.8788

Compare expression of checked genes

Lus10026990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.