Plant FIBer expression Database

Lus10026991 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31210 493 / 3e-161 DNA topoisomerase, type IA, core (.1)
AT5G63920 66 / 7e-11 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1)
AT2G32000 49 / 1e-05 DNA topoisomerase, type IA, core (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020186
[exp]
592 / 0 AT4G31210 1196 / 0.0 DNA topoisomerase, type IA, core (.1)
Lus10020187
[exp]
470 / 5e-164 ND /
Lus10004959
[exp]
60 / 4e-09 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G279700
[exp]
536 / 3e-179 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1)
Potri.005G067100
[exp]
58 / 2e-08 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1)
Potri.014G148800
[exp]
47 / 4e-05 AT2G32000 1392 / 0.0 DNA topoisomerase, type IA, core (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01131 Topoisom_bac DNA topoisomerase
CL0413 Toprim-like PF01751 Toprim Toprim domain
Representative CDS sequence
>Lus10026991 pacid=23142907 polypeptide=Lus10026991 locus=Lus10026991.g ID=Lus10026991.BGIv1.0 annot-version=v1.0
ATGTCCAAGTGCGGGCCGTTGCAGAATGTTTCGGGCTTTGGCTTGATCCCTCCTCGTCTACGATGCAAGAACTTCACACACCTTAGAGTGAAAGCCTCCA
CATTGTCTTCAGCGGCGGGTTCCCAAGGCTTCACTGATGCTTGTAAGTCTGTTTATCCACGAAGTGTAATAATCCCTTTAACTACCTCGTGTTACTCCGA
TTTGAATGGAAGGCTTGGATTGAGGGGGCATTGTTATGGAGCTATTTCGGTTCGACAGTTTTCTCAGTCGCCCGAAACCAGCTCCACTCAGGATTCGTTG
GGTAAAAGCTCCAAGGTTTCCAAGACTCGGGCTGCAAAGCAGAAAAAAAGTCTTGCTAATTCGAGTGTCTTAACCGCTAATGGTGTTGATGCCTTGAATC
CAAGTGATGGTATCAATGGTAACGTGACACTTGAGCCGCATGTTTCGACAAGTTCTGGTGCTGACGCTAACAAGACTGCCCATGGTAATGGAAAGGCGAA
GCAGTCAAAAAGTAAGAAAAGTAAAGGGCGACCTACTGCTGCTTCTCTAGAGAAAGAAGCTGTTGGTGATTCTGGAAGAAGTAAATCAGAGAACGTTTGT
AAACTGACGTTGCTAGCCTTTCAGAAAAAGTCGACTGAAAAGGCATCCGAACAAGTGCTAGATGTTTCAGCTTCTACGAAACAGAAGGCCAAAAAGGGAA
CTGGCAACTCTAGGAGAAAGAGCAGAGCTGCAAATGAGTCTACTGAGAAGCAGAAGCCTCAGGACATGAGCAACTTGAAGCCTCCTAGACAAGGGGCCTT
GAAACCGTTGTACCCCCCTACTGGTAAAACTGTAATGGTTGTTGAATCTGTTACAAAGGCGAAGGTAATTCAAGGCTATCTTGGCAGTATGTATGAAGTA
TTACCTAGTTATGGCCACGTGCGTGACTTAGCTGCCAGGTCAGGATCCGTTCGGCCTGATGAGGACTTCAGTATGGTGTGGGAGGTTCCATCTGCTGCTT
GGACATATCTTAAGAGCATTACAGTCGCTCTAAGCGGAGCAGAAAATCTTATTCTTGCGTCAGACCCTGATCGTGAAGGAGAGGCTATCGCTTGGCATAT
TATTGAGATGTTGCAGCAGCAAGATGCCCTACATGAGGGTATCAATGTAGCAAGGGTTGTCTTTCATGAAATAACAGATGCATCCATTAAAAGTGCTTTG
CAAGCGCCAAGACATGTTGATGTGAATTTGGTACATGCTTACCTAGCAAGACGTGCTCTTGATTATCTGATTGGATTCAACATTTCACCATTATTATGGA
GGAAATTACCAGGGTGCCAATCAGCAGGCCGCGTGCAATCTGCCGCACTTGCTCTTATATGTGACAGGGAATCTGAAATTGATGAGTTTAAGCCACAGGA
ATATTGGAGTATTGAGGCTAAGTTGAATAAGAAAGAACCAGGTTCTTCTTCACTCAATGCACGCTTGACCTGTTTTGATTCCAAAAAGCTGAATCAGTTC
TCGTTTAGTTCCGGTAAGGAGGTAGAGGATGTTGAACATCAGATTAAAGCTACATCTTTTGAAGTTGTTGGCTCAAAAAAAGGGCAAATTCGAAGAAACC
CTCCAACTCCTTACATAACTTCAACACTCCAGCAGGATGCAGCAAACAAATTACAGTTCAACACATCATACACAATGAAGGTCTCTGAAAATATGTTCTT
ACAAAACGTTTTCTCATGA
AA sequence
>Lus10026991 pacid=23142907 polypeptide=Lus10026991 locus=Lus10026991.g ID=Lus10026991.BGIv1.0 annot-version=v1.0
MSKCGPLQNVSGFGLIPPRLRCKNFTHLRVKASTLSSAAGSQGFTDACKSVYPRSVIIPLTTSCYSDLNGRLGLRGHCYGAISVRQFSQSPETSSTQDSL
GKSSKVSKTRAAKQKKSLANSSVLTANGVDALNPSDGINGNVTLEPHVSTSSGADANKTAHGNGKAKQSKSKKSKGRPTAASLEKEAVGDSGRSKSENVC
KLTLLAFQKKSTEKASEQVLDVSASTKQKAKKGTGNSRRKSRAANESTEKQKPQDMSNLKPPRQGALKPLYPPTGKTVMVVESVTKAKVIQGYLGSMYEV
LPSYGHVRDLAARSGSVRPDEDFSMVWEVPSAAWTYLKSITVALSGAENLILASDPDREGEAIAWHIIEMLQQQDALHEGINVARVVFHEITDASIKSAL
QAPRHVDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDRESEIDEFKPQEYWSIEAKLNKKEPGSSSLNARLTCFDSKKLNQF
SFSSGKEVEDVEHQIKATSFEVVGSKKGQIRRNPPTPYITSTLQQDAANKLQFNTSYTMKVSENMFLQNVFS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G31210 DNA topoisomerase, type IA, co... Lus10026991
[exp]
0 1
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Lus10001331
[exp]
1.4 0.9687
Lus10036489
[exp]
3.0 0.9498
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Lus10042232
[exp]
3.5 0.9378
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Lus10013636
[exp]
4.2 0.9513
AT3G23790 AAE16 acyl activating enzyme 16, AMP... Lus10008884
[exp]
6.0 0.9068
AT1G16480 Tetratricopeptide repeat (TPR)... Lus10008829
[exp]
6.3 0.9320
ATCG00180 ATCG00180.1, RP... DNA-directed RNA polymerase fa... Lus10009499
[exp]
6.3 0.9368
AT1G12700 RPF1 RNA processing factor 1, ATP b... Lus10022861
[exp]
6.6 0.9028
AT3G20440 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHI... Lus10003675
[exp]
6.7 0.9289
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Lus10005031
[exp]
7.2 0.9486

Lus10026991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.