Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65380 695 / 0 AtRLP10, CLV2 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) AT5G48940 226 / 1e-62 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 224 / 3e-62 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G73066 218 / 4e-62 Leucine-rich repeat family protein (.1) AT2G26330 222 / 3e-61 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 222 / 5e-61 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G25910 216 / 5e-60 AtRLP52 receptor like protein 52 (.1) AT4G36180 214 / 2e-58 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 213 / 3e-58 Leucine-rich receptor-like protein kinase family protein (.1) AT3G53240 212 / 4e-58 AtRLP45 receptor like protein 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020189 [exp] 1242 / 0 AT1G65380 760 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Lus10023323 [exp] 234 / 6e-65 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10027688 [exp] 232 / 9e-65 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011585 [exp] 223 / 8e-62 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 224 / 9e-62 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10033924 [exp] 221 / 1e-60 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011609 [exp] 216 / 3e-59 AT2G25790 857 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023677 [exp] 216 / 7e-59 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10033926 [exp] 215 / 1e-58 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087200 [exp] 878 / 0 AT1G65380 839 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Potri.005G235100 [exp] 235 / 2e-65 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 225 / 2e-62 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G065400 [exp] 223 / 3e-61 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 221 / 4e-61 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.008G009300 [exp] 221 / 7e-61 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.012G009200 [exp] 220 / 9e-61 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.007G009200 [exp] 220 / 1e-60 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.008G007600 [exp] 219 / 3e-60 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.011G104600 [exp] 218 / 8e-60 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026993 pacid=23142912 polypeptide=Lus10026993 locus=Lus10026993.g ID=Lus10026993.BGIv1.0 annot-version=v1.0 ATGGAAGTTAAATGGAGTTGTATTTTGCTGCCGCTACTTGTATTTTGCTCGCGATGTCTCTCGATTGATATTAATCCCAAAGATAAAGCTTCTCTGTTAC TGATTCGGTCCTGGCTCGAAGACCCGAACCACAGCTTGTCAAGCTGGGTTGGTTCTAACTGCACAACCTGGACAAGGATTACATGCCACAACCACACAGG CCAAGTTGTTTCCATTGATTTAACCAGCATGAATCTCGCCGGCCGAATTCAGCCCAGCTTGTGTCACCTCGACGCTCTTGAGTCCCTGGTGCTATCTCAA AATCTGTTTATCGGTCAAATTCCAGCATGTTTGGGTTGGTTACAGAATCTCAGAACGATTGATCTCAGTCATAATCGATTTGTTGGTGCCGTTCCTGATA GTATCGTTAAGCTCCGTCAGTTGAAAGAGCTTATACTACGTGGGAATCAGGGTTTGGGAGGTGGTGGAATTATTCCTTCCTGGATTGGAAATTTCTCAAC CAGCTTGGAAAAGCTTGATTTCGGATTCTGTTCATTCATTGGTGAGCTTCCTGAGAGTTTGTTTTACTGCCGGTCATTGAAGTACTTGGATCTTGAGAAC AACTATCTATCAGGTACAATCAACGACTTTTATCAGCCTCTGGAGTTCCTCAATCTCGGATCGAATTTGCTTTCGGGTACTCTGCCGTGTTATTCTGCTG CTGCACTATCCCTTAAGGTTCTAAATCTTGCAAACAACTCGATTCTCGGAGGGATTCCTACCTGCATTGCTTCGCTCGAAGAATTAACGCATCTCAACTT GTCGTCCAATCGTTTGGAGTATGCTCTATCGCCGAGGATCGTGTTCTCCCAGAATCTTCTTGTGTTGGACTTGAGTTTCAATGATCTGTCCGGTCCACTC CCAGCTAACGTTGCTTCGACGACTGAGAAATCGGGGCTTGTTCTTCTTGATCTTTCTCGCAATCGTTTCTCCGGTCGTATACCGTTGAAGATGACCGAGT TAAAGAGTCTGCAGGCTTTGTTTCTTTCCCACAACTTGCTCACTGGGGAAATCCCGGCTAGAGTTGGAAACCTCACTTACCTTCAAGTGATAGATTTGTC ACACAACTCGCTTTCGGGTTCGATACCTTTCACTATCGTAGGGTGTTTTCAGTTGCTTGCACTGGTGGTTAACAACAATAACCTTTCGGGGGAGATTCAA CCGGAGCTGGATGCCTTGGACAGCTTGAAGATACTTGATATAAGCAGCAACAGAATCTCAGGTGAGATTCCTTTAACTTTGGCTGGCTGCAAGTCTCTTG AGGTGGTGGATTTCAGCTCCAACAATCTTTCCGGAAATATAAATGATGCAATAACGAAATGGTCGAATTTAAAGTACATCTCCCTCGCTCGGAACAAGTT CAGTGGAAGTCTCCCCAGTTGGTTGTTCTCTTTTGTAGCAATCCAAATGATGGATCTCTCAGGGAACAGATTCTCCGGCTTCATCCCGGATGGTAATTTG AACGTTAGTTTCGACGTTAATAGCAACAATGCAAGCTCCAGTCAAAGACTTCTTCCTATGGACGAATCGCTTACAGAGATGCGAATGGCCGAGATCAAGA TATCTGCTGCAGTTGTTGACATCAATGAGTTGAGCTTTAGTTACCAACTGCCTTCGTCCCTAGTTGGCATCGATCTATCCAATAATTTGCTACGTGGAGA GATTCCAGATGGTGTATTCGGGCTGCGAGGTTTGGAGTACTTGAACTTGTCGTACAACTATCTCGACGGAGAGATTCCAAGCTTGGACAAGATGTGGAGT TTGAAGGCGTTGGATTTGTCACACAACACTCTTTCCGGTCAGATACCGGAGAACATTTCCAAGCTTGCAGTCCTGGACTTATCCTACAATAGGTTTTCAG GACTCGTCCCGAAGAACGAGAGTTACAAGAGGTTCCCAGGTGCATTTGCTGGGAATCCACATTTGTGCGTCGAGCTTTCGAGCGAAAGATGCGATGGCTA TGATGCTACAAGGCTTCCTGCAATGCCTTGGAGATCAGTTGGAGAATCTGAGCGGCCAATCTCAGTCATACTGGTCTGCTCCTTGAGTGCTATAGTGATG CTACTTTAG
AA sequence Show only first row Show all	>Lus10026993 pacid=23142912 polypeptide=Lus10026993 locus=Lus10026993.g ID=Lus10026993.BGIv1.0 annot-version=v1.0 MEVKWSCILLPLLVFCSRCLSIDINPKDKASLLLIRSWLEDPNHSLSSWVGSNCTTWTRITCHNHTGQVVSIDLTSMNLAGRIQPSLCHLDALESLVLSQ NLFIGQIPACLGWLQNLRTIDLSHNRFVGAVPDSIVKLRQLKELILRGNQGLGGGGIIPSWIGNFSTSLEKLDFGFCSFIGELPESLFYCRSLKYLDLEN NYLSGTINDFYQPLEFLNLGSNLLSGTLPCYSAAALSLKVLNLANNSILGGIPTCIASLEELTHLNLSSNRLEYALSPRIVFSQNLLVLDLSFNDLSGPL PANVASTTEKSGLVLLDLSRNRFSGRIPLKMTELKSLQALFLSHNLLTGEIPARVGNLTYLQVIDLSHNSLSGSIPFTIVGCFQLLALVVNNNNLSGEIQ PELDALDSLKILDISSNRISGEIPLTLAGCKSLEVVDFSSNNLSGNINDAITKWSNLKYISLARNKFSGSLPSWLFSFVAIQMMDLSGNRFSGFIPDGNL NVSFDVNSNNASSSQRLLPMDESLTEMRMAEIKISAAVVDINELSFSYQLPSSLVGIDLSNNLLRGEIPDGVFGLRGLEYLNLSYNYLDGEIPSLDKMWS LKALDLSHNTLSGQIPENISKLAVLDLSYNRFSGLVPKNESYKRFPGAFAGNPHLCVELSSERCDGYDATRLPAMPWRSVGESERPISVILVCSLSAIVM LL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	0	1
AT3G63430			unknown protein		Lus10003090 [exp]	1.0	0.9479
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	1.4	0.9461
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	2.8	0.8945
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	3.5	0.9012
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	4.9	0.9163
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	6.3	0.9159
AT2G44830			Protein kinase superfamily pro...		Lus10042912 [exp]	6.5	0.8774
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	7.3	0.8928
AT3G11640			unknown protein		Lus10016964 [exp]	7.5	0.8864
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	7.7	0.9056

Compare expression of checked genes

Lus10026993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.