Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16530 505 / 0 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 248 / 1e-79 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G57090 182 / 4e-52 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT2G01420 180 / 3e-51 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G77110 173 / 5e-49 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT1G70940 169 / 4e-47 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G23080 168 / 7e-47 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G73590 165 / 8e-46 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020193 [exp] 637 / 0 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 254 / 3e-82 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10013422 [exp] 251 / 4e-81 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10018007 [exp] 174 / 1e-53 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 173 / 4e-53 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 168 / 4e-51 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042004 [exp] 175 / 5e-51 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 165 / 1e-49 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 173 / 2e-48 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087000 [exp] 528 / 0 AT5G16530 513 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.019G052800 [exp] 523 / 0 AT5G16530 471 / 7e-168 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.004G124200 [exp] 270 / 3e-88 AT5G15100 378 / 2e-130 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.017G078300 [exp] 268 / 2e-87 AT5G15100 358 / 5e-123 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 188 / 1e-55 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) Potri.018G139400 [exp] 177 / 4e-50 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 175 / 2e-49 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 174 / 2e-49 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 174 / 3e-49 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 174 / 4e-49 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10026994 pacid=23142866 polypeptide=Lus10026994 locus=Lus10026994.g ID=Lus10026994.BGIv1.0 annot-version=v1.0 ATGATAGGGTGGGTGGACGTGTACAAGGTGATAGAGGCGATGGTGCCGCTATACGTAGCCTTAGTACTGGGCTACGGCTCAGTAAGGTGGTGGAAGGTGT TCACGCCGGAGCAGTGTGGGGCCATCAACAGGCTGGTGTGCTACTTCACACTCCCGTTGTTCACCTTTGAGTTCACGGCCCACGTGGACCCTTTCAAGAT GAACTACCGCTTCGTGGCCGCGGACGCTGTTTCGAAGGTCATTATAGTTGTTGTACTTGCCTTCTGGGCTAAGTTCAGCAGCAAAGGGAGTTATTGTTGG TCGATTACCAGCTTCTCCCTTTCGACGCTCACCAACTCATTGGTGGTGGGCGTTCCTCTGATGAAGGCCATGTACGGCCCCATGGCTGTCGACCTTGTGG TCCAGGGCTCCGTGGTCCAGGCCATCGTCTGGCTCACGCTTTTGTTGTTTGTGTTGGAGTTTCGTCGCACCGGGCTGGATGCTGTTGTTGTTTCCGTCCC TGATGATCATGCCGGCGGGAAGGATTTGGAGACGCAGCAAACGACGACGTATCAGCCGTCGTTTTGGTGTTTGATGAAGGTGGTGTGGGTGAAGCTGGCC ATGAACCCCAATTCCTATGCTTGTATTATCGGCCTTGTTTGGGCCTTTGTTTCTAACAGGTGGAATATTGAAATGCCGAGCATAATGGACGGGTCAGTGT CGATTATGGCCAAAGCTGGAACAGGAACTGCTATGTTTAGTATGGGCATCTTTATGGCGTTACAGGAAAAGTTGATAGCTTGCGGACCAAGTCTCACCGT CATAGGAATGGTGTTGAGATTTATTGCCGGTCCGGCTGCCATGGCTATCGGCTCCATCGTTTTTTGGCTTCCCGGCGGGGTGTTACGCGACGTTCTACGA GTTGCTATAATTCAGGCAGCTCTGCCGCAGTCCATTACTTCCTTCATCTTCGCCAAAGAATACGGCCTGCATGCTGAGGTCCTAAGCACAGCTGTGATAT TCGGAATGATAGTGTCGTTGCCGGTGTTGATAGCTTATTACGCAGCTTTGGAATTTGTTCATTGA
AA sequence Show only first row Show all	>Lus10026994 pacid=23142866 polypeptide=Lus10026994 locus=Lus10026994.g ID=Lus10026994.BGIv1.0 annot-version=v1.0 MIGWVDVYKVIEAMVPLYVALVLGYGSVRWWKVFTPEQCGAINRLVCYFTLPLFTFEFTAHVDPFKMNYRFVAADAVSKVIIVVVLAFWAKFSSKGSYCW SITSFSLSTLTNSLVVGVPLMKAMYGPMAVDLVVQGSVVQAIVWLTLLLFVLEFRRTGLDAVVVSVPDDHAGGKDLETQQTTTYQPSFWCLMKVVWVKLA MNPNSYACIIGLVWAFVSNRWNIEMPSIMDGSVSIMAKAGTGTAMFSMGIFMALQEKLIACGPSLTVIGMVLRFIAGPAAMAIGSIVFWLPGGVLRDVLR VAIIQAALPQSITSFIFAKEYGLHAEVLSTAVIFGMIVSLPVLIAYYAALEFVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10026994 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	3.0	0.8995
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	6.3	0.7632
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	6.3	0.8547
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	15.5	0.8487
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	18.3	0.8362
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	19.3	0.8468
AT5G48500			unknown protein		Lus10009584 [exp]	22.4	0.8164
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	25.8	0.8257
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	26.6	0.8356
AT3G19550			unknown protein		Lus10013900 [exp]	27.6	0.8250

Compare expression of checked genes

Lus10026994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.