Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36290 324 / 1e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G25520 148 / 2e-43 Uncharacterized protein family (UPF0016) (.1) AT1G68650 146 / 6e-43 Uncharacterized protein family (UPF0016) (.1) AT4G13590 125 / 2e-33 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 92 / 3e-21 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020195 [exp] 285 / 8e-98 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10034293 [exp] 147 / 3e-43 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10035040 [exp] 150 / 2e-42 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 143 / 1e-41 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10011763 [exp] 131 / 1e-35 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10023685 [exp] 131 / 1e-35 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10032330 [exp] 102 / 5e-25 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 94 / 1e-21 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1) Lus10021697 [exp] 41 / 0.0005 AT1G25520 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086700 [exp] 334 / 7e-116 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G053400 [exp] 330 / 5e-114 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.008G117900 [exp] 151 / 7e-45 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 149 / 5e-44 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 144 / 4e-42 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.001G053600 [exp] 127 / 3e-34 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G174600 [exp] 127 / 3e-34 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 104 / 2e-25 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01169 [flax] [poplar] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Lus10026995 pacid=23142913 polypeptide=Lus10026995 locus=Lus10026995.g ID=Lus10026995.BGIv1.0 annot-version=v1.0 ATGGGGTTTTGCTCAAACCCAACTCTTCTCCTGGCTTTCGGACTCTTGCTCTGTGCTCTCCCCTTCATCTCTGCTCAGGACGTTGCTGCGACGAATGAGA AGGAGGAATCAAATGAATCATTAAACAGTCTCGGCCGGCGTGGTTTGGTTGGTGGAAAAAATCTCGACATAACCTCTGTTGGTTTTGTTGCTTTGGATTC GGGCCTTGGGGTTTTTGATGCATTCTTTGCCAGCTTCTCAATGATCCTTGTTAGTGAGATTGGAGATGAGACTTTTATAATAGCAGCTCTTATGGCAATG CGCCACCCAAAATCAACAGTTCTATCTGGAGCGCTTGCAGCCTTGTTTGTCATGACAGTACTTTCTACTGGACTGGGACGGATTGTGCCGAACTTAATAT CCAGGAAGCATACAAACAGTGCAGCTACAGTTCTTTATTTGTTTTTTGGACTGCGGTTGCTTTACATTGCGTGGAGATCAGATTCCAAAGCATCTCAGAA AAAAGAAATGGAAGAAGTAGAAGAAAAGCTCGAGTCTGGACAAGGGAAAACCAGCTTCCGTCGCTTCTTCTCAAGATTCTGCACACCTATATTTCTGGAG GCATTTATTCTGACATTTTTGGCGGAGTGGGGAGACCGTAGCCAGATTGCGACAATTGCTTTGGCTACGCATAAGAATGCAGTTGGGGTTGCTGTTGGGG CATGCATAGGGCACACCATCTGCACTTCAGTGGCGGTAGTAGGAGGGAGTATGCTAGCTTCTAAGATCTCACAAAAGACGGTTGCTACCATTGGAGGATT GCTCTTCCTCGGATTTTCCCTCTCTTCTTATTTCTACCCTCCTCTATAG
AA sequence Show only first row Show all	>Lus10026995 pacid=23142913 polypeptide=Lus10026995 locus=Lus10026995.g ID=Lus10026995.BGIv1.0 annot-version=v1.0 MGFCSNPTLLLAFGLLLCALPFISAQDVAATNEKEESNESLNSLGRRGLVGGKNLDITSVGFVALDSGLGVFDAFFASFSMILVSEIGDETFIIAALMAM RHPKSTVLSGALAALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPIFLE AFILTFLAEWGDRSQIATIALATHKNAVGVAVGACIGHTICTSVAVVGGSMLASKISQKTVATIGGLLFLGFSLSSYFYPPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	0	1
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	1.4	0.8226
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	2.4	0.8259
AT3G03890			FMN binding (.1.2)		Lus10010649 [exp]	6.6	0.7871
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	7.1	0.7819
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10008057 [exp]	9.1	0.7005
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10011243 [exp]	11.2	0.7381
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10029276 [exp]	11.9	0.6686
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	15.7	0.7900
AT5G35460			unknown protein		Lus10017161 [exp]	19.1	0.7769
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	19.4	0.7698

Compare expression of checked genes

Lus10026995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.