Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02830 506 / 2e-179 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 442 / 8e-155 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G47850 353 / 3e-118 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 308 / 6e-101 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 285 / 7e-92 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G04990 259 / 1e-82 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 259 / 3e-82 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 234 / 2e-72 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 222 / 1e-67 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G12680 194 / 2e-56 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020196 [exp] 826 / 0 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10033962 [exp] 331 / 1e-109 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10013476 [exp] 325 / 1e-107 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10002880 [exp] 326 / 2e-107 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10007941 [exp] 321 / 5e-106 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 313 / 4e-103 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 308 / 6e-102 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035330 [exp] 287 / 2e-92 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 276 / 6e-88 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086800 [exp] 727 / 0 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 723 / 0 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 350 / 2e-117 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 341 / 2e-113 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.014G159500 [exp] 309 / 2e-101 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 308 / 3e-101 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 220 / 2e-66 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 218 / 1e-65 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 203 / 8e-60 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 201 / 7e-59 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10026996 pacid=23142903 polypeptide=Lus10026996 locus=Lus10026996.g ID=Lus10026996.BGIv1.0 annot-version=v1.0 ATGGAATTTGACCCGATGTCCCGTGAAGGAACTTCTCTGACCCCGTCCTTGAACGAAGGTTCAATGTGGCAAGTCAACTTGAGAAGCAGTGAAGCAATGG AACCTGGGCTGTATCCTGAACGTCCTGGAGAGCCTGATTGTTCTTATTATATCAGAACAGGTCTCTGTAGATTTGGGGCCACTTGCCGATTCAACCACCC TCCTAACAGAAAGCTGGCTATTGCTGCAGCAAGGATGAAAGGTGAATTTCCAGAAAGGATTGGACAGCCTGAGTGTCAGTTCTTCCTGAAAACTGGAACA TGCAAGTTTGGAGCAACATGCAAGTTCCATCATCCTAAAGACAAGGCTGGAATAGCAGGAAGAGTGTCCTTGAATAGTTTGGGCTTTCCTCATCGACCAA ATGAGGTTGAGTGTGCTTACTATTTAAGAACCGGGCAATGCAAGTTTGGAAGCACATGTAAATTTCACCATCCTCAACCGAGTAATTTAATGCTACCATT ACGGGGTTCTCCTATTTATCCTACAGTTCAATCTCCAACAACTCCTGGGCAACAATCTTACCCAGGAGGACTCACAAACTGGTCAAGAGCGTCCTACATT ACCAGCCCAAGGTGGCAGGGTCCTTCCAGTTATACTCCTCTGATACTACCTCAGGGAGTTGTTTCTGTCCCTGGTTGGAATGCATATAATGGTCAGGTGG GGTCAGTTTCGTCTCCTGATAGCCAACAACAAAGTGGAATATACGGTAGCTCACACCAGAATGAGCCATCGAGTGCAGAAGCTCAAGGGGCTTTCTCTCC ATATCGTTCAGGTTCTGTCTCTGTTGGCTATTATGCACTGCAAAGGGACAATGTTTTTCCGGAAAGACCCGGCCAGCCGGAATGCCAGTACTATATAAAA ACCGGAGACTGCAAGTTTGGTGCAGTTTGTAGGTTTCATCATCCAAGAGAGAGACTAATTCCGGCTCCAGACTGTGTCTTGAGTCCTATAGGCCTCCCTT TACGCCCTGGAGAACCGTTGTGTATCTTCTACTCTCGATATGGGATATGCAAGTTTGGTCCAAGTTGCAAGTTTGACCACCCTATGGGAATCTTCACATA CAATATGTCGGGATCAACTTCAGCTGATGCCCCGGTCCAACGTTTGCTGGGCTCATCTTCAGGACCTGCTTCGTTGGCTCTAACTTCGGAAGGGCTTGTA GAAGCATCGTCTGCAATGCCGAGGAGACTTCCGTTGTCAGAGCCAAGACAAATGGCTTCTGGAGATGATAACATTGACACAGAGGGATGA
AA sequence Show only first row Show all	>Lus10026996 pacid=23142903 polypeptide=Lus10026996 locus=Lus10026996.g ID=Lus10026996.BGIv1.0 annot-version=v1.0 MEFDPMSREGTSLTPSLNEGSMWQVNLRSSEAMEPGLYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQFFLKTGT CKFGATCKFHHPKDKAGIAGRVSLNSLGFPHRPNEVECAYYLRTGQCKFGSTCKFHHPQPSNLMLPLRGSPIYPTVQSPTTPGQQSYPGGLTNWSRASYI TSPRWQGPSSYTPLILPQGVVSVPGWNAYNGQVGSVSSPDSQQQSGIYGSSHQNEPSSAEAQGAFSPYRSGSVSVGYYALQRDNVFPERPGQPECQYYIK TGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNMSGSTSADAPVQRLLGSSSGPASLALTSEGLV EASSAMPRRLPLSEPRQMASGDDNIDTEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10026996 [exp]	0	1
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10020196 [exp]	1.0	0.9491
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	2.0	0.9359
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	3.0	0.9249
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	7.3	0.8678
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	8.8	0.8722
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	11.0	0.8793
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	12.5	0.9079
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10006470 [exp]	14.3	0.8609
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	15.5	0.8551
AT4G22120			ERD (early-responsive to dehyd...		Lus10002996 [exp]	16.1	0.8468

Compare expression of checked genes

Lus10026996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.