Plant FIBer expression Database

Lus10026998 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24090 456 / 2e-154 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020198
[exp]
516 / 1e-177 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G054500
[exp]
462 / 9e-157 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF01380 SIS SIS domain
CL0052 NTN PF00310 GATase_2 Glutamine amidotransferases class-II
Representative CDS sequence
>Lus10026998 pacid=23142929 polypeptide=Lus10026998 locus=Lus10026998.g ID=Lus10026998.BGIv1.0 annot-version=v1.0
ATGTGCGGGATATTTGCGTATCTGAATTACAATCTCCACAAGGAGAGGAGCTACATCCTTCAAGTACTCTTCAATGGCCTCCGCCGCCTGGAATACAGAG
GCTATGACTCCGCTGGTATCTCCATCGACAATTCCTCTTCGCCTTGCCCACTCGTCTTCCGTCAAGAGGGCAAAATTGAGTCCCTCGTCAAATCCGTCTA
CCAAGAGGTTTCCAGCATAAATTTAAACTTGGAAGAATCTTTCTCTGTCCATGCTGGGATAGCTCATACACGCTGGGCCACCCATGGAAAGCCAGCTCCA
AAGAACAGTCATCCCCAGACTTCTGATTCTGGAAATGAGTTTTTGGTTGTCCACAATGGTGTCATTACAAATTATGAGTGTTTGCTGAATCTTCGTCTTG
GTTTCAGGTCAAGCTTCTTCGTCTTGGTTTCAGGTCAAGCTGTTACATTTAGTCAAGTTGTTCTTGAAGTTATGTGTTATCTAGAAGGAGCTTATGCCCT
CATTTTTAAGAGTCGGCATTATCCAAATGAGTTGATTGCATGCAAACGTGGAAGTCCGTTGTGGCTGGGTGTGAAGGAATTAACTGAGGATAACACTAGT
GAGCCAACCTTTCAGGATGCTCATTTCGTTTCAAAGGATGGGAGGGCCAAAGAATTTTTCTTGTCCAGTTCAACCAACGCTATTGTTGAGCACACCAAAA
AGGTCTTGATGATCGAGGATGGTGAAGTAGTGCACTTAAAGGGGGGTGACCTGGTGGATCGACAAGGACCAATATACAGAGAGGATACTGCAGTTTTTGT
TAGTCAATCTGGTGAAACTGCTGATACGTTGCTTGCTTTAGAATATGCCCTTGAAAACGGTGCATTATGTGTTGGCATAACAAACACTGTCGGAAGTGCA
ATTGCAAGGAAAACTCACTGTGGTATTCACTTGAATGCTGGTGCTGAAATCGGTGTAGCAAGTACCAAGGCTTACACAAGCCAAATAGTTGTGATGGCAA
TGCTTGCCCTAGCTATTGGAAGCGACACAATATCTAATCAAGCTAGAAGGGAGGCTATAGTTGATGGTTTATTTGACTTGCCCAACAAAGTTAGAGATGT
GCTGAAGCTTGACAATGAGATGAAGGATCTTGCAAATCAATTAATTGCGGAGCAGTCGCTGTTGGTATTTGGAAGAGGATACAATTATGCGACAGCCCTG
GAAGGGGCTTTGAAGGTGAAGGAAGTTGCACTTATGCACAGCGAAGGTATGCTTGCTGGTGAAATGAAACACGGCCCCCTGGCTTTAGTGGACAAAACTC
TTCCCATTATCGTGATTGCTACTCGTGATGGCTGCTTCAGCAAGCAGCAGTCAGTAATTCAACAGCTTCACGCTCGCAGTGGCCGGTTAATAGTCCTTTG
TTCCGAAGGGGATGCTGCTTCAGTTTGCTCTGGAGGATCTTGTAGAGTGATTGAAGTCCCGTTAGTTGAGGATTGTCTTCAACCAGTAGTCAACATTGTT
CCATTGCAGGTGTGGTCAACATTACATATACTCTGTGAGATCATCACTATAGCTGATATAGTAATTATGTGTTTGTGA
AA sequence
>Lus10026998 pacid=23142929 polypeptide=Lus10026998 locus=Lus10026998.g ID=Lus10026998.BGIv1.0 annot-version=v1.0
MCGIFAYLNYNLHKERSYILQVLFNGLRRLEYRGYDSAGISIDNSSSPCPLVFRQEGKIESLVKSVYQEVSSINLNLEESFSVHAGIAHTRWATHGKPAP
KNSHPQTSDSGNEFLVVHNGVITNYECLLNLRLGFRSSFFVLVSGQAVTFSQVVLEVMCYLEGAYALIFKSRHYPNELIACKRGSPLWLGVKELTEDNTS
EPTFQDAHFVSKDGRAKEFFLSSSTNAIVEHTKKVLMIEDGEVVHLKGGDLVDRQGPIYREDTAVFVSQSGETADTLLALEYALENGALCVGITNTVGSA
IARKTHCGIHLNAGAEIGVASTKAYTSQIVVMAMLALAIGSDTISNQARREAIVDGLFDLPNKVRDVLKLDNEMKDLANQLIAEQSLLVFGRGYNYATAL
EGALKVKEVALMHSEGMLAGEMKHGPLALVDKTLPIIVIATRDGCFSKQQSVIQQLHARSGRLIVLCSEGDAASVCSGGSCRVIEVPLVEDCLQPVVNIV
PLQVWSTLHILCEIITIADIVIMCL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G24090 glutamine-fructose-6-phosphate... Lus10026998
[exp]
0 1
AT3G24090 glutamine-fructose-6-phosphate... Lus10020198
[exp]
6.9 0.8803
AT3G03560 unknown protein Lus10020297
[exp]
13.8 0.8521
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Lus10024097
[exp]
14.8 0.8695
AT4G16760 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) Lus10040183
[exp]
20.3 0.8563
AT5G32450 RNA binding (RRM/RBD/RNP motif... Lus10010660
[exp]
22.2 0.8203
AT1G67310 CAMTA Calmodulin-binding transcripti... Lus10003119
[exp]
22.4 0.8524
AT3G51620 PAP/OAS1 substrate-binding dom... Lus10006094
[exp]
35.3 0.7642
AT3G15160 unknown protein Lus10019614
[exp]
35.3 0.8113
AT5G18650 CHY-type/CTCHY-type/RING-type ... Lus10033969
[exp]
36.3 0.8409
AT1G07650 Leucine-rich repeat transmembr... Lus10031374
[exp]
42.7 0.8127

Lus10026998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.