Plant FIBer expression Database

Lus10027000 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11680 313 / 4e-110 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020200
[exp]
410 / 1e-148 AT5G11680 315 / 1e-110 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G158200
[exp]
315 / 1e-110 AT5G11680 324 / 3e-114 unknown protein
Potri.001G072600
[exp]
309 / 2e-108 AT5G11680 314 / 2e-110 unknown protein
PFAM info
Representative CDS sequence
>Lus10027000 pacid=23142799 polypeptide=Lus10027000 locus=Lus10027000.g ID=Lus10027000.BGIv1.0 annot-version=v1.0
ATGGCTCTGAATCCTCAACTTCTTCCTAATGGACTGCCCGTTCCTTTCGTCAACGAGATGTTTGTGTTGGCTAGAGATGGCGTCGAATTTGAAATTGACA
AGATCCCGGGAAGCAATCATGTCAAAGCTAGAGGAACCATATATTTGTCAAACATAAGAATGGTTTTTGTCGCAAATAAGCCTATGGGAATATTTGGTGC
TTTTGACATGCCCCTGCTTTATGTCCATGGTGAGAAGTTTAACCAACCAGTATTTCACTGCAACAATATAGCAGGCCGAGTGGAACCAGTTGTCCCAGAA
AACGTGAACAGCAGTCTTTACTCGGCCCACTCATTCAAGATCCTGTTCAAAGAAGGAGGGTGTGGAACCTTTGTCCCACTGTTCTTCAACTTGATAGCTT
CAGTAAGGCAATACAACCGACAGCAGAACTATGCACGAAGCCCTGCTGTGGATCCACTGCAGGCGGCAGAGACTCCAGCAGTGGATGAAATGATAAGACA
TGCATATGTTGATCCGAACGATCCAACAAAGATCTTCCTGCAGCAGCCAGCACCAGGGACAGAACTAAGGCGTCGAACGTATGGTACGCAAGCAGAAGGA
CATGCCATATGA
AA sequence
>Lus10027000 pacid=23142799 polypeptide=Lus10027000 locus=Lus10027000.g ID=Lus10027000.BGIv1.0 annot-version=v1.0
MALNPQLLPNGLPVPFVNEMFVLARDGVEFEIDKIPGSNHVKARGTIYLSNIRMVFVANKPMGIFGAFDMPLLYVHGEKFNQPVFHCNNIAGRVEPVVPE
NVNSSLYSAHSFKILFKEGGCGTFVPLFFNLIASVRQYNRQQNYARSPAVDPLQAAETPAVDEMIRHAYVDPNDPTKIFLQQPAPGTELRRRTYGTQAEG
HAI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11680 unknown protein Lus10027000
[exp]
0 1
AT2G02390 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, ... Lus10020519
[exp]
3.5 0.8988
AT3G54170 ATFIP37 FKBP12 interacting protein 37 ... Lus10042086
[exp]
3.9 0.8972
AT1G22040 Galactose oxidase/kelch repeat... Lus10025357
[exp]
4.0 0.9269
AT5G66450 Phosphatidic acid phosphatase ... Lus10028328
[exp]
4.0 0.9048
AT3G45310 Cysteine proteinases superfami... Lus10034895
[exp]
4.2 0.9236
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Lus10042014
[exp]
4.6 0.9155
AT5G43280 ATDCI1 "delta\(3,5\),delta\(2,4\)-die... Lus10002583
[exp]
5.2 0.8914
AT4G25670 unknown protein Lus10039276
[exp]
5.7 0.9082
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Lus10018779
[exp]
7.0 0.9055
AT4G37560 Acetamidase/Formamidase family... Lus10011528
[exp]
7.3 0.9059

Lus10027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.