Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65230 327 / 1e-112 Uncharacterized conserved protein (DUF2358) (.1) AT1G16320 41 / 0.0006 Uncharacterized conserved protein (DUF2358) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020202 [exp] 464 / 1e-167 AT1G65230 312 / 6e-108 Uncharacterized conserved protein (DUF2358) (.1) Lus10009597 [exp] 42 / 0.0003 AT1G79510 284 / 2e-96 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085300 [exp] 370 / 4e-129 AT1G65230 368 / 1e-128 Uncharacterized conserved protein (DUF2358) (.1) Potri.010G173000 [exp] 42 / 0.0003 AT1G79510 357 / 4e-125 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10027002 pacid=23142884 polypeptide=Lus10027002 locus=Lus10027002.g ID=Lus10027002.BGIv1.0 annot-version=v1.0 ATGAATATTGCTTGTGCTGCCATTTGCCCCTCTCCAACACTCGCCTCCGCCCGCCGCCGCCGCCATCACTTCTTCTTCTGCCACCGCACCACCACAATCC TCACTTCCAATTCACCCTTCTTCACTTCTTCCCGCGCCCTACCACCACTCAAAGCTGCTGCGAATGATGATCCTTCTCCTGTTGGGGAAGGAAGGTCGGA GGCGGACAAGATCGTGGACGGGATGGACTTCGGAGAGCTCTGTAATGAGTTCGAATGCATAAGCAGTCCACTGGTGGAATCCACTGCCAGACAACTTGTG AGGGACATCCTTCAGCTTCGCCAGGGCAACCGCGCTCTTGGCACCTTCTCCGTCTCCGTCACTTACAAGGATCCTGTCAGAAGTTTCACCGGTCGTGACA AGTACAAACGCCCTCTTTGGTTCACCGATGCCCTCCGTCACCCTTCCACGAGCGTGCAAGAAATGGTGATGCTATCGAGGAGCTTGTTGAGGATCAGATG GACTGTCAGGGGGAAACCGAAATCCTTCATCCCCGGCTTACTTGCTGGAGAGCTTATAATCAGAGTGAAGTCTGACTTCAATCTCAACCAGATCAGTGGT CAAGTCATTGAGCACCAAGAATCCTGGGATCTCTCGGATTCATCCTTACTCGGTCAGGCGTTCTTCTGGGCTTCTCGTTGCACTTTCGCAGCATTCGAAG CCGGAAAAGATTTGGGTGTTCTGTTCAAGGACTTGAGCAGCCGCTTCTCCAGTCAGAAGGACGACAACTCAGAGATTTATCCCGACCCCTCTGGCGATCC AACCAAATTCTTTCAAACAGACGACAGCTTCCAAAGAGACGCTTACCAGATTGCTCTGTTTCTAGCAGTCGTCTATCTGGTTTACCAGTTCCTCAGGATG ACCTTGTAA
AA sequence Show only first row Show all	>Lus10027002 pacid=23142884 polypeptide=Lus10027002 locus=Lus10027002.g ID=Lus10027002.BGIv1.0 annot-version=v1.0 MNIACAAICPSPTLASARRRRHHFFFCHRTTTILTSNSPFFTSSRALPPLKAAANDDPSPVGEGRSEADKIVDGMDFGELCNEFECISSPLVESTARQLV RDILQLRQGNRALGTFSVSVTYKDPVRSFTGRDKYKRPLWFTDALRHPSTSVQEMVMLSRSLLRIRWTVRGKPKSFIPGLLAGELIIRVKSDFNLNQISG QVIEHQESWDLSDSSLLGQAFFWASRCTFAAFEAGKDLGVLFKDLSSRFSSQKDDNSEIYPDPSGDPTKFFQTDDSFQRDAYQIALFLAVVYLVYQFLRM TL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	0	1
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	1.0	0.9594
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	2.4	0.9481
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	3.5	0.9301
AT4G27610			unknown protein		Lus10043458 [exp]	4.8	0.9052
AT4G40070			RING/U-box superfamily protein...		Lus10034157 [exp]	5.5	0.9178
AT1G73885			unknown protein		Lus10034345 [exp]	5.5	0.9507
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	6.2	0.9148
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	6.3	0.9308
AT2G15220			Plant basic secretory protein ...		Lus10026580 [exp]	6.4	0.8915
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	7.3	0.8977

Compare expression of checked genes

Lus10027002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.