Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026703 [exp] 341 / 5e-121 ND / Lus10041636 [exp] 114 / 8e-32 ND / Lus10024084 [exp] 112 / 5e-31 ND / Lus10005397 [exp] 105 / 2e-28 ND / Lus10005395 [exp] 105 / 2e-28 ND / Lus10024931 [exp] 97 / 5e-25 ND / Lus10022894 [exp] 97 / 6e-25 ND / Lus10005398 [exp] 95 / 1e-24 ND / Lus10022893 [exp] 91 / 1e-22 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027003 pacid=23151553 polypeptide=Lus10027003 locus=Lus10027003.g ID=Lus10027003.BGIv1.0 annot-version=v1.0 ATGTCGTCCGCGGAGACGGTACTTGGATTGCCCAGGTACATGCTACTCGAAACCAAATACAGGGACCAGCAAACCGGATTCGACGAGTACAAACTCCTTC ACTACCTCTGGAACGATGAGTTCGCCCCCTACTACAAAGGGTTCGGTAGCGTTAGAGATTTGGACCCTGCAAGCAGCCCGTTCGTAATGCTGGAGGTTGT CCCTTCCACAAGTCGCCCAACGACCCACGTCCACCTCCGTTGCTCCTACAATAACAAGTACCTGCGTCTCGAACTGCACCCCACCATCGCCGGACTCAAC TACCTCGTTGCCACTGCCAATGCTCCCAACGAGAGCAACACGGGGTCCAACGAATCCACACTCTTCAGTCCCCGCAGGTTCCCCGGGAACATCGTCTCTT TCGAGCACAACTCCGGACGTTGGTTGCAAGCACCCACATTTACCGCGGCCTATGTGTATGCGAATGAGGGCGACAGTGGGGTTTTCTTCAAGTATTCGCG ATGA
AA sequence Show only first row Show all	>Lus10027003 pacid=23151553 polypeptide=Lus10027003 locus=Lus10027003.g ID=Lus10027003.BGIv1.0 annot-version=v1.0 MSSAETVLGLPRYMLLETKYRDQQTGFDEYKLLHYLWNDEFAPYYKGFGSVRDLDPASSPFVMLEVVPSTSRPTTHVHLRCSYNNKYLRLELHPTIAGLN YLVATANAPNESNTGSNESTLFSPRRFPGNIVSFEHNSGRWLQAPTFTAAYVYANEGDSGVFFKYSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027003 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	1.4	0.9011
					Lus10026703 [exp]	1.4	0.8762
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	3.0	0.8715
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	4.2	0.8075
					Lus10000901 [exp]	5.7	0.7841
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10029061 [exp]	10.0	0.7763
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	11.7	0.7825
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	11.7	0.7731
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	20.4	0.7237
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	21.2	0.8496

Compare expression of checked genes

Lus10027003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.