Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 215 / 6e-64 Protein kinase superfamily protein (.1.2) AT1G66980 218 / 9e-63 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38280 212 / 3e-62 PR5K PR5-like receptor kinase (.1) AT1G66930 211 / 5e-62 Protein kinase superfamily protein (.1) AT1G66910 209 / 2e-61 Protein kinase superfamily protein (.1) AT4G18250 211 / 4e-61 receptor serine/threonine kinase, putative (.1) AT5G38240 206 / 9e-61 Protein kinase family protein (.1) AT1G67000 210 / 2e-60 Protein kinase superfamily protein (.1) AT5G38260 206 / 5e-60 Protein kinase superfamily protein (.1) AT5G38250 203 / 1e-59 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025554 [exp] 457 / 2e-159 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10022359 [exp] 423 / 2e-144 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027119 [exp] 404 / 2e-137 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025492 [exp] 404 / 7e-136 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008362 [exp] 393 / 1e-133 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10008335 [exp] 390 / 7e-130 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 343 / 9e-117 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027085 [exp] 330 / 6e-112 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10027116 [exp] 325 / 1e-110 AT5G39030 209 / 2e-63 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 325 / 9e-110 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 325 / 4e-109 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 322 / 6e-104 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009000 [exp] 309 / 2e-103 AT5G38280 306 / 3e-99 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 319 / 1e-102 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G141125 [exp] 318 / 4e-102 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 318 / 6e-102 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G008800 [exp] 315 / 4e-101 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.015G018600 [exp] 313 / 6e-101 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G008600 [exp] 312 / 6e-101 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027006 pacid=23151607 polypeptide=Lus10027006 locus=Lus10027006.g ID=Lus10027006.BGIv1.0 annot-version=v1.0 ATGGATTCTTACAGTGCCATAAGGGACAGGAAGGAGTTCCTGGCCGTGTCAGCGAAAGAGGAGCACTTGAATGAGGTTTTGACTCTGATCAGCTGCGAGA ATCCTGTCAGCTCTGCTATGTTTATCGAAATAGCTCCTTGCAGTTATGAAAATTCTTCGCGGTATGCAGTTAACGGTGGTGGCTTGAAAGCATCAAGTTT GGCAAAGATGTGCAGAGTTGATATGATGGCTATGCTACCAAAGAAGGAGAAGAAGAGTTATTATAAGATACCGTTTCATGACATTCACAGTCGGCTCGAG TATGGGTTCGTGCTCTCGTGGCACCTTTACAAATGCCGTCTGAAAAACTTCTTGGGCTTAAAGAGTTGCTACCTCGATGGGTACAACAATGTCCGGTGCA ACGCAACCCTTGGAAGACTGTTACTTTCCATGGTCTACAAAGCAAAGCTTCGCAGTGGTGGTTTTGCAGCCATCAAGATGCTTGGGAAGTCCGAAGCTGG AGGAGGAAAAGGTCAAGACTTTATGAGTGAAGTTGCTACCATTGGCAGGATTCACCATGCTAATGTAGTGAGACTGATTGGCTTCTGTTCCGAAGGGACA AAACGCGCTCTTGTCTACGAGTTCATGCCAAATGGCTCTCTTGACAAGTACATATTCCACAAGCAAGGATACATCTGTTTGAGCTTTGAACAACTGTACC AAATTTCTCTCGGAGTGGCTCAAGCGATTGAGTATCTTCACAGCGGTTGTGCCATGCAGATTCTGCATTTCGACATCAAACTACACAATATTCTTCTCGA CGAGAAGTTCAACCTGAAGGTGTCTGATTTTGGGTTGGCGAAACTGTACCACGCTGGTGATGGAGTTGCAACTTTGACTGCAGTAAGGGGAACCATAGGA TATATGGCACCTGAGCTGTTCTACAAGAACATTGGAAGCGTCTCTTACAAAGCTGATGTGTATAGCTCTGGAATGCTGCTTTTGGAAATGACAGGTAAAA GGAATAACATGAACGCATCGACAGATCATTCGAGCCAAGTTTACTTCCCTTTCTGGGTTCATGACCAGGTGGTCCACACCTACTATGGTGGTCGGAGATG CTACAGAAGAGGAAAAGACCTTTGCAAAGAAGATGGTTATAGTAGGGTTGTGGTGCATCCAGACAAATCCCGGAAACCGTCCTCCGATGAACAAAGTGGT GGAGATGCTTGA
AA sequence Show only first row Show all	>Lus10027006 pacid=23151607 polypeptide=Lus10027006 locus=Lus10027006.g ID=Lus10027006.BGIv1.0 annot-version=v1.0 MDSYSAIRDRKEFLAVSAKEEHLNEVLTLISCENPVSSAMFIEIAPCSYENSSRYAVNGGGLKASSLAKMCRVDMMAMLPKKEKKSYYKIPFHDIHSRLE YGFVLSWHLYKCRLKNFLGLKSCYLDGYNNVRCNATLGRLLLSMVYKAKLRSGGFAAIKMLGKSEAGGGKGQDFMSEVATIGRIHHANVVRLIGFCSEGT KRALVYEFMPNGSLDKYIFHKQGYICLSFEQLYQISLGVAQAIEYLHSGCAMQILHFDIKLHNILLDEKFNLKVSDFGLAKLYHAGDGVATLTAVRGTIG YMAPELFYKNIGSVSYKADVYSSGMLLLEMTGKRNNMNASTDHSSQVYFPFWVHDQVVHTYYGGRRCYRRGKDLCKEDGYSRVVVHPDKSRKPSSDEQSG GDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10027006 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	17.9	0.7514
AT4G38380			MATE efflux family protein (.1...		Lus10023943 [exp]	28.2	0.7458
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	85.6	0.7092

Compare expression of checked genes

Lus10027006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.