Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 335 / 1e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 285 / 5e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 272 / 3e-83 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G22830 268 / 4e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G13770 259 / 2e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G14730 259 / 3e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 263 / 5e-78 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 258 / 5e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G08070 259 / 2e-77 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 258 / 4e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009487 [exp] 475 / 2e-159 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003508 [exp] 432 / 3e-147 AT1G71490 415 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003509 [exp] 301 / 7e-100 AT1G22830 136 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028593 [exp] 287 / 3e-88 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 271 / 4e-83 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000043 [exp] 256 / 1e-82 AT1G71490 253 / 1e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 270 / 2e-82 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 272 / 5e-80 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 274 / 8e-80 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 374 / 4e-121 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 289 / 2e-89 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 288 / 3e-87 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 283 / 2e-86 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 281 / 4e-86 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 276 / 2e-84 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 280 / 7e-84 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 274 / 1e-83 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G136200 [exp] 272 / 3e-82 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 275 / 3e-81 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027008 pacid=23151545 polypeptide=Lus10027008 locus=Lus10027008.g ID=Lus10027008.BGIv1.0 annot-version=v1.0 ATGCAGAAGTTTATACGTAGACACTGGAAGCAAATTGTTGCTACTAAGCATGCTGGTACTGTTATCGTTGAGCCTCTGGTTCGCCATAGTTATGCTGTTA AGGATGGACACATCAAGTTAAGCTTTTTAGTAACCTGCGTTAATGATCTCACAAGCCAAGGGAATCTGTGTAAGGCATTCAAAACATTTTCGTCAGTGCA ACGACATGCTCGTACACATCAGGACTCGCTCGTGGATTCGATTGCTTTCCTTTTGTTTGCTTCTTCTGCTCGGAAATCGACTTGGCAAGGAGGAAGACAG CTCCACGGGCATATGATCTCGTTAGGGTTGCAGAAAGATCCTGTTTTGGTACCAAAGCCCGTTACTTACTACTCGAACTTCGAGTCCTTGGTCGACTGTC ATGCTGTTGTCGAGAATGCGAATATTATGGACCCTTTGCCTTGGACTTTGCTTATTGTTGCGTATGGTAGGAATGAGCTGTATGGAAAGGCTCTTTCTGC TTATATGGAGATGAGGAGTAAAGGAGTTAGACCTAATAATTTCACTTATCCATCGGTTCTGAAGGCTTGCGGAAAGCAGTCGGATTTGGCTTTCGGAAAG GAGGTTCACAGCTCCATTAAACCTAGCAATCATCGCTGGAGTTTGTTTGTGCATAATTCATTAATATCAATGTATAATAAAACTGGGGAGCTAGAAGTTG TACAGTGTTTGTTTGACGAGATGCTGGATGGGGATGTTGTGTCTTGGAATTCAATTATTGGTGGTTATGCTTCCAAGGGAATGTGGAAGGAAGCCAATGA GCTGTTCGAAAGAATGGAAAAGAGGTTGCTTGTCAAGGTTGAGCCCAATTACGTTACTATCGCGAGCATTCTTCGGATCTGTCCTCGAATTGTGGATCTA CGACATGAAAAGGAGTTCCAGTCCTACATTCTAAAATGTCCGGTGGTTAATGATTATTTAATAATATGGAACGCGCTTGTCCGGATGTATGCCAGGTCCG GGAAGCTTCCAGAAGCTAGAAAATTGTTCGATTCGATGAGCACCAAGGACGAGGTAACCTACACATCTCTAATAGCTGCGTATGGGATGCAAGGCGACAG GCAAACTGTACTCAAACTCTTCAAGGAAATGCATCGGCGGAAAATCAAACTGGATCTTGTCACAATGGTTGTGGTTTTGTCAGCGTGTAGCCATTCCGGT CTAGTAACCGAAGGGGAAATGCTGTTTCGAGAAATGTCGAGTTTCTACAACTTCGTCCCTCGATTAGAGCACTATGCTTGCACGGTGGATCTCTTCGGGA GGGCAGGGATGTTAAATCGAGCGAAGGAGACCATGTTAATTATGCCTTACAGTCTGACGCCTGCAATTTGGAATACTCTCTTACGAACTTGCCAGAATCA TGTAAATGCAGATATAAGGGAATGGGCACGTACGCATTTGCTAGATATGAAACTGAAAAATTCGGGGTCGTATGTGTCGAGTGCCAACATGTATGCCAAT GACGGCAGTTGGAATAAGTTGGCGAAAGTTCGGACCTTTATGAAGAATGTGGGTGTGAGAAAGTCTCCTGGATGTGCCTGGGTTGATCTGGGGTCCGGTT TTAGGAGGTTCTTTGTAGGGGGTTGTTCTGAAGAACACGGGAATGAACTTTCCACTGTTGGATGGGATGACTCGGCTGTGATGCATCAGAATATGTTAGC TCGAAGATGA
AA sequence Show only first row Show all	>Lus10027008 pacid=23151545 polypeptide=Lus10027008 locus=Lus10027008.g ID=Lus10027008.BGIv1.0 annot-version=v1.0 MQKFIRRHWKQIVATKHAGTVIVEPLVRHSYAVKDGHIKLSFLVTCVNDLTSQGNLCKAFKTFSSVQRHARTHQDSLVDSIAFLLFASSARKSTWQGGRQ LHGHMISLGLQKDPVLVPKPVTYYSNFESLVDCHAVVENANIMDPLPWTLLIVAYGRNELYGKALSAYMEMRSKGVRPNNFTYPSVLKACGKQSDLAFGK EVHSSIKPSNHRWSLFVHNSLISMYNKTGELEVVQCLFDEMLDGDVVSWNSIIGGYASKGMWKEANELFERMEKRLLVKVEPNYVTIASILRICPRIVDL RHEKEFQSYILKCPVVNDYLIIWNALVRMYARSGKLPEARKLFDSMSTKDEVTYTSLIAAYGMQGDRQTVLKLFKEMHRRKIKLDLVTMVVVLSACSHSG LVTEGEMLFREMSSFYNFVPRLEHYACTVDLFGRAGMLNRAKETMLIMPYSLTPAIWNTLLRTCQNHVNADIREWARTHLLDMKLKNSGSYVSSANMYAN DGSWNKLAKVRTFMKNVGVRKSPGCAWVDLGSGFRRFFVGGCSEEHGNELSTVGWDDSAVMHQNMLARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10027008 [exp]	0	1
AT4G31930			Mitochondrial glycoprotein fam...		Lus10017126 [exp]	16.2	0.6726
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	62.7	0.6547
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	73.9	0.6439
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10033576 [exp]	93.3	0.6341
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033435 [exp]	135.1	0.6092
AT1G76065			LYR family of Fe/S cluster bio...		Lus10005622 [exp]	142.0	0.5884
AT1G47278			unknown protein		Lus10016567 [exp]	161.1	0.5950
AT1G16510			SAUR-like auxin-responsive pro...		Lus10040643 [exp]	161.9	0.6019

Compare expression of checked genes

Lus10027008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.