Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43240 656 / 0 Nucleotide-sugar transporter family protein (.1.2) AT3G59360 655 / 0 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2) AT2G43235 244 / 2e-72 unknown protein AT5G41760 148 / 6e-39 Nucleotide-sugar transporter family protein (.1.2) AT4G35335 136 / 6e-35 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025486 [exp] 783 / 0 AT2G43240 678 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10025487 [exp] 588 / 0 AT2G43235 289 / 2e-93 unknown protein Lus10037204 [exp] 162 / 4e-44 AT5G41760 542 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10036726 [exp] 161 / 7e-43 AT5G41760 516 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026562 [exp] 137 / 1e-34 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013845 [exp] 115 / 4e-27 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G035800 [exp] 660 / 0 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.008G077300 [exp] 639 / 0 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 628 / 0 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.007G124600 [exp] 320 / 8e-101 AT2G43235 348 / 9e-117 unknown protein Potri.001G094600 [exp] 138 / 1e-35 AT5G41760 525 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 137 / 3e-35 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G136800 [exp] 136 / 7e-35 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10027009 pacid=23151502 polypeptide=Lus10027009 locus=Lus10027009.g ID=Lus10027009.BGIv1.0 annot-version=v1.0 ATGAAAAACGCTGTGATAGAATGCAGCGTTTGCCGGTCCAAACTGCTGTCCCCAGCTTCCAAAACTGTTTCCAGGGCTTATGACAGGCACAAGAGCAGGG TATCATCCAAGCAGCGTGCCCTCAATGTTTTGTTGGTTGTTGGTGATTGTATGTTAGTTGGCTTATCGCCTATACTGGTTTACATGTCCAAGGTGGATGG GAAATTTGAGTTCAGTCCAGTAAGTGTCAACTTCTTGACAGAAATTGCAAAGGTCGCATTTGCAATTGTTATGCTTATTTTACAGGCTAGACGTCAAAAA GTTGGAGAGAAGCCACTTCTATCATTATCTTCACTTACACAGGCAGCTCGTAACAACGTCCTTCTTGCAGTTCCTGCTTTTCTATATGCTATCAATAATT ATCTGAAGTTCACCATGCAGCTTTATTTTAATCCTGCAACCGTGAAGATGCTGAGCAATCTAAAGGTTCTGGTTATTGCTGTTCTGCTGAAGTTTGTAAT GAAGCGGCGTTTTTCTATAATTCAGTGGGAAGCCCTTGCTTTACTGCTCATTGGAATTAGCATAAATCAGTTACGGTCTTTACCTGAAGGTGCTACTGCA ATGGGCCTTCCAGTTGCAACGGGAGCTTACATGTACACTTTTATCTTTGTTACAGTTCCTTCTCTGGCTTCTGTCTATAACGAGTATGCCCTGAAGAGCC AATATGACACCAGTATATACCTTCAGAATCTGTTTTTGTATGGATATGGTGCGATATTCAATTTTCTGGCGATTTTGGCAATTTCTGTCGTCAAAGGTCC TAGTAGCATGGACATCCTTCACGGCCATTCAAAAGCTACAATGCTTCTAATATGTAACAATGCAGCCCAAGGGATTTTGTCGTCCTTTTTCTTTAAATAT GCAGACACTATCCTGAAGAAGTACTCATCAACGGTGGCCACCATCTTCACAGGCATTGCATCTGCCGCAATGTTTGGTCACAAGTTGACCATGAACTTTG TGTTGGGAATCTCTATTGTGTTCATTTCAATGCACCAGTTTTTCTCGCCTCTTTCGAAACCCAAAGATGAGCCAGAAAATGTGGTTGTGGAACTCAAGGA GGTTGAGGACAATCGCAGGTCAAAAGAGTCGTTCATAAACATGGCAGCCGGAGCAAATGAAGGGTACGACGACAATTGCCGCCAGCGCCGCCGGATACAG ACCGTTAAAACAGTTGCTCCGCTTGAAATGAATTCCACCACCACCCTCCGCTTCTCTCCTCTTCTTCATCCTCGCTTCCTTACCAAATCTCCGGATATCC TTCCTCCTTCCAGATTCTTCTCCTCCTCAATCCGATGCTCTTTCTCCACTAGGCGCCGCCGCGGCACTCGCCGGTCCGGCAGGAGGAAACTACTCCAAAC CACAACCTCCACCCGTCCTTCCTTCATCCACGACGACGAAGACCTCGATCACTCTACCGCAGCTCAGAGCCTTCAATTGGTCCTCGATCTCGACCAGCTC TCCTCACTCGCCTCTTCCAACCTCCGTCAGTTTATCTCCGCCGGCAGAGAGGCGTATCGCGATCTTAGAACCCTAGTCTCCTACGATGAGAACAACAGGA TCGTCTTCTCCTGCCGTAAGTCGACTGTGCGGTTCACCGGCATGTTTTTGCTCTGTGGATTTGTGTTGGTTACAGCGGTTAGGGTTTTGGTTAGTTTGGG GCTTGCGATTAGGCGGCAGGTAGCGTTTAGGCGGGAGAAGGTTGTGGTTAGGAGAGACCGTAGTCTTGGGGGGAGGGAGGTGGTAGTGGCGACGGCCACA GCGGCGGAGAGAGATGGTGTGGCGATGCCGAAGAGGAAGAGGTTTGGGGTTTTGGATAATCCTTTGTCGTCTCTGAGTCTTGCTATGGAGGGAAATGACT GGGGGAAGTATCTAGGTCGGAAGCAAGACAAGCTGCCCCAATGGTGGCCGGTGACGGTGGAGGGCCCTGTGTCCATTGACAACCAGGAGCAGCATCAAAG GGAAGCCAAGAGATTGATTCGAGAAATCACGGATTATAGAACAAGGGGAAAGGATTTTGCAGTGGATGACATAATTCAATTGCGTCGAATATGCAGGACG TCTGGAGTGAAGGTTAGCTTTGACACCACACACACTCGCGACGCATTATTTCGTGCACTAATTGACTTTGTTCTAAACATGTGTAGTAGTAATCCAAGTT ACAACAGGATACTTGAGATTGATAGTGAAGGTGTTCAGGAATTCATTGCTGGGCTTGCTGAAAATATTGGGCTTGAGAATGTTCGCGCCGCACGAATTGT ATCTGCAGCTGTTGCTGCACGTACTCATTCATGTTTCTTGCAGGCTTGGGCGGAAATGGAGATGGTAGCAGAGGGACTGGGAAAGCATTTGAAGATGGAG CAGAGGGAAGTTCTAATGAACATGTTTCTAGCCGCTTGCAGCAGTAAAGAGTGCCATAGAATGGCAGCAAATGCCCTTGGCTTGAAGCTGCCGTCTGAAG ACAGCAGCAGCAGAAGTCCAGTTGAAAGCTAA
AA sequence Show only first row Show all	>Lus10027009 pacid=23151502 polypeptide=Lus10027009 locus=Lus10027009.g ID=Lus10027009.BGIv1.0 annot-version=v1.0 MKNAVIECSVCRSKLLSPASKTVSRAYDRHKSRVSSKQRALNVLLVVGDCMLVGLSPILVYMSKVDGKFEFSPVSVNFLTEIAKVAFAIVMLILQARRQK VGEKPLLSLSSLTQAARNNVLLAVPAFLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKFVMKRRFSIIQWEALALLLIGISINQLRSLPEGATA MGLPVATGAYMYTFIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLAILAISVVKGPSSMDILHGHSKATMLLICNNAAQGILSSFFFKY ADTILKKYSSTVATIFTGIASAAMFGHKLTMNFVLGISIVFISMHQFFSPLSKPKDEPENVVVELKEVEDNRRSKESFINMAAGANEGYDDNCRQRRRIQ TVKTVAPLEMNSTTTLRFSPLLHPRFLTKSPDILPPSRFFSSSIRCSFSTRRRRGTRRSGRRKLLQTTTSTRPSFIHDDEDLDHSTAAQSLQLVLDLDQL SSLASSNLRQFISAGREAYRDLRTLVSYDENNRIVFSCRKSTVRFTGMFLLCGFVLVTAVRVLVSLGLAIRRQVAFRREKVVVRRDRSLGGREVVVATAT AAERDGVAMPKRKRFGVLDNPLSSLSLAMEGNDWGKYLGRKQDKLPQWWPVTVEGPVSIDNQEQHQREAKRLIREITDYRTRGKDFAVDDIIQLRRICRT SGVKVSFDTTHTRDALFRALIDFVLNMCSSNPSYNRILEIDSEGVQEFIAGLAENIGLENVRAARIVSAAVAARTHSCFLQAWAEMEMVAEGLGKHLKME QREVLMNMFLAACSSKECHRMAANALGLKLPSEDSSSRSPVES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	2.0	0.9243
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	2.2	0.9278
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	3.2	0.8947
AT2G27900			unknown protein		Lus10009613 [exp]	3.9	0.9136
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	4.0	0.9113
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	6.9	0.8452
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	7.2	0.8605
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	7.5	0.8705
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	7.7	0.8668
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	7.7	0.8861

Compare expression of checked genes

Lus10027009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.