Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18220 710 / 0 Noc2p family (.1) AT3G55510 256 / 2e-76 RBL REBELOTE, Noc2p family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025551 [exp] 1116 / 0 AT2G18220 831 / 0.0 Noc2p family (.1) Lus10036510 [exp] 254 / 1e-71 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041417 [exp] 239 / 4e-68 AT3G55510 487 / 2e-163 REBELOTE, Noc2p family (.1) Lus10020167 [exp] 220 / 4e-62 AT3G55510 459 / 3e-154 REBELOTE, Noc2p family (.1) Lus10026968 [exp] 151 / 7e-40 AT3G55510 336 / 1e-110 REBELOTE, Noc2p family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012800 [exp] 791 / 0 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.003G213601 [exp] 385 / 6e-129 AT2G18220 416 / 4e-140 Noc2p family (.1) Potri.008G043400 [exp] 301 / 4e-92 AT3G55510 591 / 0.0 REBELOTE, Noc2p family (.1) Potri.003G213450 [exp] 110 / 6e-28 AT2G18220 118 / 5e-31 Noc2p family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [flax] [poplar] Noc2 Noc2p family
Representative CDS sequence Show only first row Show all	>Lus10027010 pacid=23151496 polypeptide=Lus10027010 locus=Lus10027010.g ID=Lus10027010.BGIv1.0 annot-version=v1.0 ATGGACGTCGAATACCCAGTTAAGGATCTGGAAGATGAGACGATGGAGGAAGATGATGATCAAGAGATTGGAAAAATGGCTGGTAAAGGGCACAAAGATG AGCTAGAAAGACTCAAGACAAAGGATCCTGAGTTTTATAAGTTCTTGCAAGAGCAAGATAAGGGGCTTCTTACATTTGAAGATGATGATGAGGAGGATGA GGAGGATGATGATGCTGATGCTGATGCTGATGCGGATGGTGATGCTGATGAGGATGAGCCAGTGAGCGATCATATCCAATTTGAGAAGGAGGATAAATCA TCTAAATATGTTGTTACCACATCAATGGTTGAGTCCTGGATCAATGCAGCAGTAGAAGGTGGAAAAATAGGTGCACTTCGCTCTCTTCTGAAAGCTTTCA GAATTGCTTGCCACTATGGCGATGATAGCGGGGATGACTCTGCAGCAAAATTAAGTACCATGTCCAGTAGCGTGTTCAATAAAATAATGGTGTTTGTCCT GAGTGACATGGATGGAATCCTTCGTAAGATGTTGGGTTTGCCTTCTTATGGTGGCAAGAAAGAGACGATGATTGATATGATATCTTTCACATTACGTCGC CTCAAGTATTCGTCTCTACTATTGGCTGCTTTCCCAAGTCTCTTGCGCAAGTATGTCAAGGTTGCCCTTCACTTTTGGGGTACAGGAGGAGGAGCCCTCC CTGTTATATCTACTCTTTTCCTGAGGGACTTATGCATACGACTTGGGTCAGAATGTGCAGATGATTGCTTCAAAGGCATGTATAAGGCATATGTTCTGAA CTGTCAGTTCATAAATGCTGTAAAGATGCAGCATATCCAATTTCTTGGGAATTGTGTGATAGAAATGTTCCGGGTGGACCTTCCTACTGCCTATCAACAA GCTTTTGTTTACATTCGACAGTTGGCAACGATTCTAAGGGATGCAATCACTGTGAAAACTAAGGAATCATTCCGCAGGGTTTACGAATGGAAATATATGA ATTGCCTTGAACTTTGGACTGGTGCGGTCTGTGCCTACAGTTCTGAAGCTGATTTCAGGCCTTTAGCCTATCCATTGACTCAAATTATTTCGGGCGTGGC TTCTCTGGTTCCAACTGCTAGATACTTTCCTCTTAGATTAAGGTGTGTCAGAATGCTCAATCGTATCGCTGCATCCACTGGAACATTTATACCTGTTTCC ACTCTCCTCTTGGACATGTTAGAAATGAAAGAACTAAACAGGCCACCCACTGGAGGTGTTGGCAAAGCTGTTGATTTGCATACCATGTTGAAGGTGAACA AGCCTACATTGAAAACACGAGCATTTCAAGAAGCCTGTGTATATTCCGTGGTCGAAGAACTGGCTGAACATTTAGCTCAATGGAGTTACTCAATGGCTTT CTTTGAACTGTCTTTTATTCCAGCTGTGCGATTGCGAACCTTCTGCAAAGTTACAAAAGTTGATAGATTCAGAAAAGAAATGCGACAGCTTATACGTCAG ATTGAGGCCAACTCTAAGTTTACAAATGCAAAACGTACGTCAATGACTTCGTTACCCAATGATCCTGCAGCGGCGTCTGAGATCGAGAATGAGAACAAGA TGGGGCCTAGTCCTTTGTCAAAGCATGTTATTGCACTGCGTGAAAGAGCAAAGGAAAGAAGTAGCTCATTGACGGAATCCAGCGTCGTAGTTGGGGAGAA TTCTTCCATATTTCACAAAAAGACATCTGAAGAAGATGATCATGATGACGAATATGAAGATGATCATGAAAACGAGGATGCCGCAGATGTGTTCAACTCC TCTTGGTTACCCGCTGGCGTCCCCAAGGGTAACCCGTCCGAGAAGAAGGAGAAGAAGAAGAAGCGAAAGAAAGGTCAACAAGGTCCAGAAGATGATATCG TTGAGGATCTGGTATTGAGTTCCGATGAGGATGAACCTCTGACTCACATTTCTGACGATGAAGATGAGAAAGTGAACAGCAGCCCTCAAAAGAAGAAGCG GAAACTATCAAAGAAGGAATCTCGCTCAAAGAAACCATGGAGGAAGCAGAGGAAAAGTTAA
AA sequence Show only first row Show all	>Lus10027010 pacid=23151496 polypeptide=Lus10027010 locus=Lus10027010.g ID=Lus10027010.BGIv1.0 annot-version=v1.0 MDVEYPVKDLEDETMEEDDDQEIGKMAGKGHKDELERLKTKDPEFYKFLQEQDKGLLTFEDDDEEDEEDDDADADADADGDADEDEPVSDHIQFEKEDKS SKYVVTTSMVESWINAAVEGGKIGALRSLLKAFRIACHYGDDSGDDSAAKLSTMSSSVFNKIMVFVLSDMDGILRKMLGLPSYGGKKETMIDMISFTLRR LKYSSLLLAAFPSLLRKYVKVALHFWGTGGGALPVISTLFLRDLCIRLGSECADDCFKGMYKAYVLNCQFINAVKMQHIQFLGNCVIEMFRVDLPTAYQQ AFVYIRQLATILRDAITVKTKESFRRVYEWKYMNCLELWTGAVCAYSSEADFRPLAYPLTQIISGVASLVPTARYFPLRLRCVRMLNRIAASTGTFIPVS TLLLDMLEMKELNRPPTGGVGKAVDLHTMLKVNKPTLKTRAFQEACVYSVVEELAEHLAQWSYSMAFFELSFIPAVRLRTFCKVTKVDRFRKEMRQLIRQ IEANSKFTNAKRTSMTSLPNDPAAASEIENENKMGPSPLSKHVIALRERAKERSSSLTESSVVVGENSSIFHKKTSEEDDHDDEYEDDHENEDAADVFNS SWLPAGVPKGNPSEKKEKKKKRKKGQQGPEDDIVEDLVLSSDEDEPLTHISDDEDEKVNSSPQKKKRKLSKKESRSKKPWRKQRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	0	1
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	2.2	0.9612
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	3.5	0.9579
AT1G63810			unknown protein		Lus10026014 [exp]	4.2	0.9575
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	5.0	0.9458
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	6.3	0.9458
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10042818 [exp]	6.6	0.9174
AT2G37690			phosphoribosylaminoimidazole c...		Lus10042546 [exp]	6.9	0.9405
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	8.3	0.9174
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	8.5	0.9366
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	8.8	0.9452

Compare expression of checked genes

Lus10027010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.