Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025554 [exp] 195 / 8e-60 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025492 [exp] 171 / 2e-49 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027006 [exp] 148 / 1e-42 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 89 / 2e-20 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027117 [exp] 85 / 9e-20 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2) Lus10027119 [exp] 84 / 1e-18 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025544 [exp] 74 / 5e-15 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 73 / 1e-14 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10022368 [exp] 62 / 4e-11 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125450 [exp] 60 / 2e-10 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 59 / 4e-10 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125200 [exp] 59 / 5e-10 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 57 / 3e-09 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.007G125800 [exp] 55 / 1e-08 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 48 / 2e-06 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027012 pacid=23151506 polypeptide=Lus10027012 locus=Lus10027012.g ID=Lus10027012.BGIv1.0 annot-version=v1.0 ATGCTGAAAGGGAACTTGATGTCATCTGCTGTGTTGTTAGGTCCTGTACCACAGCTTGGTGTTCTGCTGCAGGAAAGGTTGAGGCTTTCTGCTGATTCTG CAAGTAGGAAAATCAAGCAGCACAGAATACTTGTTAAAGGGGAATTCATCATCGATTCATCTCGTTTGGGAGTTTGTTCTGTTCATGTAAATAAAAGGGT TGGTGGAACAATGAACATCTTAATCACTGAAAAAGACAGTTTCTGGGAAGAGAGGAAAAGTCAACCTTTTGCTGCAAGTGGGGCTTCTTCTTCAAAAGAT GATAAATTATGTGAGGACCACATCTTCTTGGCCATGTCAGCTAAAGAGGAGCACTTGAATGAGGTGTTGACTCTGGTAAGCTACGAGAATCCTGTCAGCT CTGCAATGTTTAGACAGCTCCTTGTCGGTGGTCGTGTGAATGCTTCAAGTCTGGCAAAGATGTGCAGAGTTTATATGATAACTATGCTACCAAAGAAGAA GAAGGGTTATGATAAGATGCCCTTTCAAGAGATTCACAGGCAGCTCGAGTATGGGTTAGAGCTTTCGTGGCACCTGTATGAATGCGGTCTAAAGAACTGC CTGGGGGTAAATAGTTGCTACCTCGACAGATACAACAATGTCCTCTGA
AA sequence Show only first row Show all	>Lus10027012 pacid=23151506 polypeptide=Lus10027012 locus=Lus10027012.g ID=Lus10027012.BGIv1.0 annot-version=v1.0 MLKGNLMSSAVLLGPVPQLGVLLQERLRLSADSASRKIKQHRILVKGEFIIDSSRLGVCSVHVNKRVGGTMNILITEKDSFWEERKSQPFAASGASSSKD DKLCEDHIFLAMSAKEEHLNEVLTLVSYENPVSSAMFRQLLVGGRVNASSLAKMCRVYMITMLPKKKKGYDKMPFQEIHRQLEYGLELSWHLYECGLKNC LGVNSCYLDRYNNVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027012 [exp]	0	1
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10011670 [exp]	13.7	0.7215
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	17.0	0.7848
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	19.4	0.7657
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10023569 [exp]	51.7	0.6704
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10009768 [exp]	53.4	0.7066
AT2G18210			unknown protein		Lus10025998 [exp]	56.3	0.6941
AT4G36500			unknown protein		Lus10025997 [exp]	90.0	0.6652
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	111.1	0.6822
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	131.8	0.6829

Compare expression of checked genes

Lus10027012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.