Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 189 / 6e-56 PR5K PR5-like receptor kinase (.1) AT1G66930 189 / 6e-56 Protein kinase superfamily protein (.1) AT1G66910 189 / 9e-56 Protein kinase superfamily protein (.1) AT5G38260 188 / 9e-56 Protein kinase superfamily protein (.1) AT1G67000 189 / 3e-55 Protein kinase superfamily protein (.1) AT1G66920 185 / 9e-55 Protein kinase superfamily protein (.1.2) AT1G66980 186 / 6e-54 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT4G18250 186 / 6e-54 receptor serine/threonine kinase, putative (.1) AT1G70250 185 / 9e-54 receptor serine/threonine kinase, putative (.1) AT5G39030 180 / 5e-52 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025554 [exp] 439 / 1e-154 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025492 [exp] 406 / 2e-139 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008362 [exp] 330 / 1e-111 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10022359 [exp] 302 / 7e-100 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10026759 [exp] 288 / 3e-99 AT1G66930 196 / 5e-59 Protein kinase superfamily protein (.1) Lus10008335 [exp] 303 / 1e-98 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10014924 [exp] 291 / 1e-94 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025545 [exp] 278 / 1e-93 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027006 [exp] 280 / 3e-93 AT1G66980 218 / 1e-66 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007900 [exp] 317 / 1e-104 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 317 / 2e-104 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.015G018600 [exp] 315 / 5e-104 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009100 [exp] 311 / 3e-102 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 308 / 3e-101 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 310 / 4e-101 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.007G140800 [exp] 301 / 6e-101 AT5G38280 333 / 1e-107 PR5-like receptor kinase (.1) Potri.007G125200 [exp] 301 / 1e-100 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.017G009500 [exp] 306 / 6e-100 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 305 / 2e-99 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027013 pacid=23151594 polypeptide=Lus10027013 locus=Lus10027013.g ID=Lus10027013.BGIv1.0 annot-version=v1.0 ATGATGCAAAATCATACCTCTACAGTGGTGATAGCTCACTTGTTAATTCCTCCTCTGGGAACTCCATTGGTAGGTGCGTTTCTGATATATAAATGGCGAA GGAGACATCCATCAGCATACGACAAGATAGAGGAGTTCCTTCAGAACCAAAACCTCATGCCGGTCAGGTACTCTTACTCCGAGATCAAGAAGGTCACTCG AGGATTCAAGGACAAGCTAGGTGAAGGCGGCTTTGGTTCCGTCTACAAAGCAAAGCTCCGCAGCGGTGGTTTTGCAGCAGTCAAGATGCTTGGGAAGTCC GCAGCTGGAGGAGGAGGAGGTCAAGACTTTATGAGTGTAGTTGCTACCGTTGGCAGGATTCACCATGTTAATGTAGTGAGAGTAATCGGCTTCTGCTACG AAGGGACTAAGCGTGCTCTTGTCTACGAGTTCATGCCCAATGGTTCTCTTGACAAGTATATATTCCACAAGCAAGGTTATATCTCTTTGAGCTTCGAACA ACTGTACCAAATTTCTGTCGGAGTGGCTCGAGCAATTGAATATCTCCACAGCGGCTGTGCCATTCAGATTCTGCATTTCGATATCAAACTCCACAACATT CTCCTCGATGAGAAGTTCAACCCGAAGGTGTCTGATTTCGGGTTGGCTAAACTTTATCAGGCTGGTGATAGAGTTGCAACTTTGACTGCTGTAAGAGGAA CCATAGGATACACTGTTGGTCCCGGATAA
AA sequence Show only first row Show all	>Lus10027013 pacid=23151594 polypeptide=Lus10027013 locus=Lus10027013.g ID=Lus10027013.BGIv1.0 annot-version=v1.0 MMQNHTSTVVIAHLLIPPLGTPLVGAFLIYKWRRRHPSAYDKIEEFLQNQNLMPVRYSYSEIKKVTRGFKDKLGEGGFGSVYKAKLRSGGFAAVKMLGKS AAGGGGGQDFMSVVATVGRIHHVNVVRVIGFCYEGTKRALVYEFMPNGSLDKYIFHKQGYISLSFEQLYQISVGVARAIEYLHSGCAIQILHFDIKLHNI LLDEKFNPKVSDFGLAKLYQAGDRVATLTAVRGTIGYTVGPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Lus10027013 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034232 [exp]	8.8	0.5845
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	11.0	0.6138
					Lus10005828 [exp]	20.8	0.5168
					Lus10032915 [exp]	28.7	0.5080
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	30.0	0.5012
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	32.4	0.4980
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	33.5	0.4980
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	34.6	0.4980
					Lus10013881 [exp]	34.9	0.4950
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	35.7	0.4980

Compare expression of checked genes

Lus10027013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.