Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49150 150 / 2e-40 GEX2, ATGEX2 gamete expressed 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025556 [exp] 306 / 1e-96 AT5G49150 928 / 0.0 gamete expressed 2 (.1) Lus10017746 [exp] 101 / 5e-26 ND / Lus10000391 [exp] 101 / 7e-24 AT3G47040 270 / 1e-83 Glycosyl hydrolase family protein (.1.2) Lus10039500 [exp] 69 / 1e-12 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10033205 [exp] 69 / 1e-12 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10025326 [exp] 62 / 2e-11 ND / Lus10040205 [exp] 55 / 2e-09 ND / Lus10032972 [exp] 56 / 6e-09 ND / Lus10037917 [exp] 52 / 3e-07 AT3G52210 474 / 2e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G124900 [exp] 202 / 3e-58 AT5G49150 993 / 0.0 gamete expressed 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027014 pacid=23151554 polypeptide=Lus10027014 locus=Lus10027014.g ID=Lus10027014.BGIv1.0 annot-version=v1.0 ATGGCGGTCAGGACTCCATTTCTCTCTCCCATTTCCCTCCTCGCTTTCATTTTGCTTGCATCCTCGGCAACACAACTCGCCAACTCGTCAGGGAGAATTT ACCCTTCCGCGTGCATTGCTACTTGGATGGATCTGATGAGTGAGTTTACTGTTGGGAGTATAGCCAGGATCTTTATAGTTCCCAGGGATGCATTTGGGAA TAATGTTACTTCAATTGGTGAGGATTTGACTCCTCACAATTTCACTATCTCTGTGGTTTATGGGAATGGCTCTCTTGATAATGTGCCTAACATCACAAGC ATCAGACCTTTGGATGTTCAGAATTGCCGTGGTGAGTGGAAAGTTGAAACAAATATGTGGCAGATATACTCCAAAATGGAGATTTTCATATACCAACAGG ATAAATATGGAAATATTGTCCCTGGATCATATGAGTTTGACGCTGATGTTATTGAAAAGGAGACCCATATGTTAGTACCTGTTGCAGATTTGCACTTTGA AGAAGTGTTGCCAGGAATCCAAAACATCTCAGCCATGCCATTCAAGTACACAGTCTTTATAGAAAGCATAAGAGTTCAGATTGTGAGGGAAAACGATTCC TACAGTGTCCAACCCAGCATCTTTCCAATTGTCAATGGTTGTGCACGCTCGCGGAAAGGACCTACAGGGAGAGGTGTAGCCGCTCCATCTGGCTCTGGAG CGGGTACCAGATCATCTCGTGGGTCACAGGACTCGTCTACTGTGGGCCCTAGACGTGACAGAGGAGCGCGTTCTGCAGGGGTCCACTCTAGCAGCACCAA CGGGGAATGGTTGCTTACTGGTCCAACTCCTGGTGGACCCCGAATCCCTATTGTGATCCCTAGTTTCGGCGGTCACGTAGCCCAACCCCTCTGGACGAAA GGTATGGTCTCCAGGCCAGCATCACGGTTCAGACTTCACCTTGCGAATGCTAGGGTCATGAGGCTAGAGAGGTTCTAG
AA sequence Show only first row Show all	>Lus10027014 pacid=23151554 polypeptide=Lus10027014 locus=Lus10027014.g ID=Lus10027014.BGIv1.0 annot-version=v1.0 MAVRTPFLSPISLLAFILLASSATQLANSSGRIYPSACIATWMDLMSEFTVGSIARIFIVPRDAFGNNVTSIGEDLTPHNFTISVVYGNGSLDNVPNITS IRPLDVQNCRGEWKVETNMWQIYSKMEIFIYQQDKYGNIVPGSYEFDADVIEKETHMLVPVADLHFEEVLPGIQNISAMPFKYTVFIESIRVQIVRENDS YSVQPSIFPIVNGCARSRKGPTGRGVAAPSGSGAGTRSSRGSQDSSTVGPRRDRGARSAGVHSSSTNGEWLLTGPTPGGPRIPIVIPSFGGHVAQPLWTK GMVSRPASRFRLHLANARVMRLERF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10027014 [exp]	0	1
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	9.3	0.6614
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	17.1	0.6523
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	24.7	0.6076
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10003995 [exp]	28.6	0.5936
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	34.4	0.6327
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	73.3	0.5083
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	75.7	0.5024
AT2G34930			disease resistance family prot...		Lus10016340 [exp]	76.0	0.4969
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	83.7	0.5495
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	115.0	0.5215

Compare expression of checked genes

Lus10027014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.