Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31600 122 / 5e-35 unknown protein AT3G53860 114 / 4e-32 unknown protein AT1G05860 114 / 6e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025558 [exp] 187 / 4e-60 AT2G31600 239 / 7e-78 unknown protein Lus10026896 [exp] 164 / 2e-51 AT2G31600 241 / 5e-79 unknown protein Lus10003417 [exp] 46 / 1e-06 AT2G31600 157 / 2e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126300 [exp] 158 / 4e-49 AT2G31600 244 / 2e-80 unknown protein Potri.017G035200 [exp] 155 / 5e-48 AT2G31600 238 / 2e-77 unknown protein Potri.010G180200 [exp] 126 / 6e-37 AT1G05860 180 / 1e-55 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027016 pacid=23151493 polypeptide=Lus10027016 locus=Lus10027016.g ID=Lus10027016.BGIv1.0 annot-version=v1.0 ATGGCTTTGACTAGCTTCTGTCACCTTCATATAGTCTCCGATCCCAAGCAGACGCTCTACAAGGCCTGCTCTTTTGTTATCAAGAGTGCTGCGGCAAAAC CAATAACCTGTGGAAAGCCTATACTGCAAACAACCGTTCCTTGTCTGTGTACCCTCCACTTCCAAAAGGCTCAGCAGCATGTGACTCGAGCTTTGAAGAA AGCAGGTCTTAACGTTACTGCATCAAGTAAACTTGCTCCTAAGTTTCATGTCATAGTTGCAGAATATGTGAACCAAATTCAGGCCAAGAGAAGAGCTGCA AAAAGAGCGAAATTTAACAAAGTCGTTGATAAGGAAGTCAAAGGTGTGGGTGGTGGTAAATGCTCAGTGTTCAAATCTTGA
AA sequence Show only first row Show all	>Lus10027016 pacid=23151493 polypeptide=Lus10027016 locus=Lus10027016.g ID=Lus10027016.BGIv1.0 annot-version=v1.0 MALTSFCHLHIVSDPKQTLYKACSFVIKSAAAKPITCGKPILQTTVPCLCTLHFQKAQQHVTRALKKAGLNVTASSKLAPKFHVIVAEYVNQIQAKRRAA KRAKFNKVVDKEVKGVGGGKCSVFKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31600			unknown protein		Lus10027016 [exp]	0	1
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	11.4	0.7929
AT5G27260			unknown protein		Lus10032348 [exp]	21.2	0.7664
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10040424 [exp]	33.7	0.7149
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032747 [exp]	64.2	0.7577
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	71.7	0.7080
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10013315 [exp]	73.2	0.7153
					Lus10028051 [exp]	95.0	0.7368
AT3G11920			glutaredoxin-related (.1)		Lus10029074 [exp]	109.9	0.7430
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	112.2	0.7499
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	136.1	0.7365

Compare expression of checked genes

Lus10027016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.