Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43360 608 / 0 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025559 [exp] 715 / 0 AT2G43360 624 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126400 [exp] 622 / 0 AT2G43360 609 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1) Potri.017G033300 [exp] 619 / 0 AT2G43360 606 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0036 [flax] [poplar] PF06968 [flax] [poplar] BATS Biotin and Thiamin Synthesis associated domain
Representative CDS sequence Show only first row Show all	>Lus10027018 pacid=23151489 polypeptide=Lus10027018 locus=Lus10027018.g ID=Lus10027018.BGIv1.0 annot-version=v1.0 ATGCTGTCAGCTCGATCTATCTTCCGACCTCTCCGCCATTCAAACCTCTCGATTTCCTCCGTACATTACTCATCGTCTTCAGCTGCTTCAATTGAAGCCG AGAGAGCCATTCGAGAAGGCCCCCGCAACGATTGGAGTCGTCCTCAAATCAACGATGTTTACCAATCCCCTCTCCTCGATCTCCTCTTCCATGGCGCTCA AGTTCACAGACACGCGCATAACTTTAGGGAAGTTCAGCAATGCACTCTTCTTTCTATCAAGACCGGTGGGTGCAGTGAGGACTGTTCTTACTGCCCTCAG TCCTCCCGTTATAGCACTGGTCTTAAAGCTCAGAAGCTCATGGGCAAAGATGCTGTTCTCGAGTCTGCCAAAAGGGCGAAAGAAGCTGGAAGCACGCGTT TTTGTATGGGTGCTGCATGGAGAGATACAGTAGGAAGGAAGACCAACTTCAACCAGATATTAGATTATGTAAAAGAAATCAGGGATATGGGGATGGAGGT CTGCTGCACCTTGGGCATGCTAGAGAAGGAGCAGGCTGCAGAACTCAAGAAGGCTGGCCTTACAGCTTATAATCATAATCTTGATACCTCGAGAGAGTAT TATTCCAAAGTTATCACTACAAGAACATATGATGAACGTCTGAAGACCCTTGAGCATGTCCAGGAAGCTGGAATTCATGTCTGCTCAGGAGGCATAATCG GCCTGGGAGAAGCAGAGGAAGACAGAGTTGGTCTGTTGCATACATTAGCAACACTTCCTAAGCACCCAGAGAGTGTTCCTGTTAATGCTCTTGTTGCAGT AAAAGGCACGCCTCTGGAAGACCAGAAGCCTGTGGAAATCTGGGAAATGGTACGAATGATAGCCACTGCGCGCATAGTGATGCCAAAAGCAATGGTGAGA CTATCAGCAGGGAGAGTGAGTTTCTCAATGGCTGAGCAGACGCTTTGCTTTCTGGCCGGTGCAAATTCAATCTTCACAGGGGAGAAGCTGTTGACGACTC CCAACAATGATTATGATGCCGACCAACAAATGTTCAAAATCCTTGGGTTGATCCCAAAGCCACCCAGTTTTGGCGAGGCCGAAGAACAAGAGCTGAAAGT GGCTTCTTCCTCAAACTAA
AA sequence Show only first row Show all	>Lus10027018 pacid=23151489 polypeptide=Lus10027018 locus=Lus10027018.g ID=Lus10027018.BGIv1.0 annot-version=v1.0 MLSARSIFRPLRHSNLSISSVHYSSSSAASIEAERAIREGPRNDWSRPQINDVYQSPLLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ SSRYSTGLKAQKLMGKDAVLESAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILDYVKEIRDMGMEVCCTLGMLEKEQAAELKKAGLTAYNHNLDTSREY YSKVITTRTYDERLKTLEHVQEAGIHVCSGGIIGLGEAEEDRVGLLHTLATLPKHPESVPVNALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVR LSAGRVSFSMAEQTLCFLAGANSIFTGEKLLTTPNNDYDADQQMFKILGLIPKPPSFGEAEEQELKVASSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	3.5	0.9454
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	4.7	0.9022
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	5.3	0.8986
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	5.5	0.9169
AT5G02610			Ribosomal L29 family protein ...		Lus10023449 [exp]	6.2	0.9348
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	7.3	0.9339
AT1G13690		ATE1	ATPase E1 (.1)		Lus10014565 [exp]	7.5	0.8792
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	8.5	0.9283
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	11.7	0.8747
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	12.6	0.8971

Compare expression of checked genes

Lus10027018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.