Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56810 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22610 50 / 5e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 48 / 2e-06 F-box/RNI-like superfamily protein (.1) AT4G00315 48 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 48 / 3e-06 F-box/RNI-like superfamily protein (.1.2) AT3G58900 47 / 3e-06 F-box/RNI-like superfamily protein (.1.2.3.4) AT5G56690 47 / 4e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G67390 47 / 4e-06 F-box family protein (.1) AT5G44940 47 / 7e-06 F-box/RNI-like superfamily protein (.1) AT3G62440 47 / 8e-06 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025560 [exp] 431 / 3e-155 AT5G22610 53 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10025561 [exp] 235 / 2e-77 AT3G49150 52 / 2e-07 F-box/RNI-like superfamily protein (.1) Lus10021833 [exp] 218 / 4e-71 AT3G42770 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027020 [exp] 151 / 2e-45 AT1G51370 58 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) Lus10015246 [exp] 141 / 6e-40 AT5G44960 44 / 8e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034559 [exp] 103 / 2e-28 AT3G59000 53 / 8e-10 F-box/RNI-like superfamily protein (.1.2) Lus10042304 [exp] 52 / 3e-08 AT2G39415 59 / 1e-11 F-box family protein (.1) Lus10042477 [exp] 50 / 5e-07 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10040760 [exp] 49 / 1e-06 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 54 / 4e-08 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024600 [exp] 52 / 1e-07 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G136200 [exp] 50 / 6e-07 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.014G163866 [exp] 48 / 2e-06 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.014G039700 [exp] 45 / 2e-05 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 44 / 6e-05 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.013G146800 [exp] 44 / 6e-05 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 44 / 6e-05 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121500 [exp] 44 / 8e-05 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 43 / 0.0001 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027019 pacid=23151597 polypeptide=Lus10027019 locus=Lus10027019.g ID=Lus10027019.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGGGGGATCTTTTCCAGAAGTTGCCGGAGGAGTTACTCACCAGAGTAACAGGGTTCTTACAGCTCAAAGACGCCGCGAGAACAAGCATTC TTTCACAGCGATGGCGCTGCGCCTGGAGAAAATCACCGAATCCTCACTTCGACGGCAACAAAACAACAAAATTCAGGAGCAACGGCTATCCGATCTCCTG TTACCAGAACGTCCACCATTTCTTCAACTGGATGGACACGATCATCGCCCAGAAGGATGAGGATACCGATCTCCTTATTGAATCGTTAGGTCTCAACTTC AGCACAGATGAAGAAGAATTAAACAACAGCAACTATGGATGGATCGAATTGAGGAAATCATCGGACGATTCCACTATAATCGGCAGCTACAGAGTCGTGT CTTTCTTGTCCAATTCGTCGATTCCAGGAATCATCAGCAGCTTGACCGATCTGCTGTCGAGGCGGCCGAATCTGATCCTCAGACGATTGACGCTGCGGAA CTGTAATATGGAAACCCTAGAGAGTCGGATATTCACCGGCGGAGGCGGCGACTGTTTCAAGTCGTTGGAATCGCTGGTTATGCAATGCGGTGGGAAATGG ATAGAGTTAGGATTGGTGTCGCGGTTGATTGAAAGTGTTCCGTCGCTGAAGGATATTACGCTGGAGGATTGCAAAGTCGACGTCGGCGACGGACTTTCCG TCGAGGGGAGTAACATTAAGCTTAACTTCGTTCGTTGTACTCTGCACTGA
AA sequence Show only first row Show all	>Lus10027019 pacid=23151597 polypeptide=Lus10027019 locus=Lus10027019.g ID=Lus10027019.BGIv1.0 annot-version=v1.0 MEEEGDLFQKLPEELLTRVTGFLQLKDAARTSILSQRWRCAWRKSPNPHFDGNKTTKFRSNGYPISCYQNVHHFFNWMDTIIAQKDEDTDLLIESLGLNF STDEEELNNSNYGWIELRKSSDDSTIIGSYRVVSFLSNSSIPGIISSLTDLLSRRPNLILRRLTLRNCNMETLESRIFTGGGGDCFKSLESLVMQCGGKW IELGLVSRLIESVPSLKDITLEDCKVDVGDGLSVEGSNIKLNFVRCTLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10027019 [exp]	0	1
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	3.5	0.9060
AT5G19970			unknown protein		Lus10019451 [exp]	7.4	0.9067
					Lus10025897 [exp]	7.5	0.8853
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	7.9	0.8926
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	8.0	0.8343
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	10.9	0.8793
AT3G62940			Cysteine proteinases superfami...		Lus10005939 [exp]	11.6	0.8401
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	19.9	0.8835
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	23.8	0.8538
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	26.7	0.8852

Compare expression of checked genes

Lus10027019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.