Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51370 59 / 3e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT3G26922 56 / 2e-09 F-box/RNI-like superfamily protein (.1) AT1G66310 53 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52670 51 / 1e-07 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G66290 51 / 1e-07 F-box/RNI-like superfamily protein (.1) AT4G00160 51 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G19070 48 / 1e-07 F-box family protein (.1) AT5G56420 51 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56690 50 / 2e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G52680 50 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025560 [exp] 159 / 1e-48 AT5G22610 53 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027019 [exp] 146 / 2e-43 AT5G22610 53 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10021833 [exp] 137 / 8e-40 AT3G42770 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10025561 [exp] 119 / 1e-32 AT3G49150 52 / 2e-07 F-box/RNI-like superfamily protein (.1) Lus10034559 [exp] 98 / 1e-26 AT3G59000 53 / 8e-10 F-box/RNI-like superfamily protein (.1.2) Lus10015246 [exp] 79 / 4e-17 AT5G44960 44 / 8e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028368 [exp] 52 / 6e-09 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 55 / 8e-09 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 54 / 1e-08 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 56 / 4e-09 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.014G039700 [exp] 53 / 3e-08 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 52 / 1e-07 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 50 / 4e-07 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 49 / 7e-07 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G163866 [exp] 48 / 2e-06 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G136200 [exp] 48 / 2e-06 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.011G024600 [exp] 47 / 3e-06 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G011200 [exp] 47 / 4e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G121500 [exp] 47 / 4e-06 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10027020 pacid=23151612 polypeptide=Lus10027020 locus=Lus10027020.g ID=Lus10027020.BGIv1.0 annot-version=v1.0 ATGGAGCAACCAGAGGAACACGAAGATGATCGTTTCCAGGATCTACCGGAGGAGTTCCTTACAAAGATAGCAGGACACCTTCCACTGAAAGACTCGGCGA GAACCAGCATTCTCTCGAGGCAATGGCGATACGCCTGGAGAAAAACCCCCAATCCTCACTTCGACGGCAACAATCGCACCGAATTCAGAACCAATGGCTG CCCGATCTCCTGCTTCGAAACCCTAGCCGATTTCTACAATTGGATGGACAAGATGATCCGCCGTCTTGCAAAAGACGAGGGGATTCGAGGTGGTTTCCGG ATGGAATCGTTATCTCTCAACTTGCTCAAGCCGGGTCCATTAGGATCCGTCGAATTTAGGTATAATTCAGACGACTCTGTTGTAATCGGAGGGTTCAAAG TAGTGCGTCTATTGTCCTTGTCGTCGTCATCGTCGGGGATCATCAGCCTGAGCGATTGGCTGTCTCGTCAGCGGCCGAATCTCCTCGTGAAATTGACCCT GCAGATGTCTTGTACTGAATGCCATATTTCTAGCGGTGGATTGGCACGGTGGCGGAACCAGCATCGAGGTATGGAGAAGTTTGTGTATTGCATAACCAAC CGTCAGCAAGAGGAGGGTAATTAA
AA sequence Show only first row Show all	>Lus10027020 pacid=23151612 polypeptide=Lus10027020 locus=Lus10027020.g ID=Lus10027020.BGIv1.0 annot-version=v1.0 MEQPEEHEDDRFQDLPEEFLTKIAGHLPLKDSARTSILSRQWRYAWRKTPNPHFDGNNRTEFRTNGCPISCFETLADFYNWMDKMIRRLAKDEGIRGGFR MESLSLNLLKPGPLGSVEFRYNSDDSVVIGGFKVVRLLSLSSSSSGIISLSDWLSRQRPNLLVKLTLQMSCTECHISSGGLARWRNQHRGMEKFVYCITN RQQEEGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	0	1
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	1.4	0.8982
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	4.5	0.8804
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	6.0	0.8649
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	6.0	0.8702
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	7.1	0.8343
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	8.4	0.8644
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	9.2	0.8405
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	11.0	0.8573
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	11.2	0.8326
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	11.5	0.8515

Compare expression of checked genes

Lus10027020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.