Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31570 266 / 2e-92 ATGPX2 glutathione peroxidase 2 (.1) AT2G43350 250 / 1e-85 ATGPX3 glutathione peroxidase 3 (.1.2) AT4G31870 248 / 4e-84 ATGPX7 glutathione peroxidase 7 (.1) AT4G11600 242 / 4e-82 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT2G25080 238 / 3e-80 ATGPX1 glutathione peroxidase 1 (.1) AT1G63460 225 / 2e-76 ATGPX8 glutathione peroxidase 8 (.1) AT2G48150 211 / 2e-70 ATGPX4 glutathione peroxidase 4 (.1) AT3G63080 210 / 2e-70 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008022 [exp] 258 / 5e-89 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10008499 [exp] 255 / 4e-87 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 252 / 6e-87 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10042418 [exp] 248 / 4e-84 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10026887 [exp] 248 / 6e-84 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10008023 [exp] 235 / 6e-79 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10003421 [exp] 236 / 2e-78 AT4G31870 319 / 9e-110 glutathione peroxidase 7 (.1) Lus10000601 [exp] 227 / 4e-77 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10000603 [exp] 220 / 3e-74 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126600 [exp] 294 / 4e-103 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.003G126100 [exp] 253 / 2e-86 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105200 [exp] 245 / 5e-84 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.006G265400 [exp] 245 / 4e-83 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.001G105100 [exp] 240 / 8e-82 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.014G138800 [exp] 215 / 4e-72 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 160 / 2e-50 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027021 pacid=23151526 polypeptide=Lus10027021 locus=Lus10027021.g ID=Lus10027021.BGIv1.0 annot-version=v1.0 ATGGCAGATTCTTCTTCTCTTTTACCTCCCAACTCCATCTATGACTTCACTGTTAAGGATATAAAGGGGAGTGATGTGAATCTGAGTGAATACAAGGGGA AGGTTCTTCTCATCGTCAATGTTGCTTCCAAATGTGGGTTGACACACGCAAACTACAAGGAATTGAACGTGCTATACCAGAAATACAAAGACCAAGGGCT AGAGATCCTAGCATTCCCTTGCAACCAGTTTGGTGGACAAGAACCAGGAACCATTGACGAAATCCAGGACACTGTATGCACCATCTTCAAAGCTGAATTC CCAATCTTTGACAAGGTCGATGTGAACGGGAAGAACACTGCGGAGGTGTACAAGTACTTGAAGTCGGAGAAAGGAGGGTTTCTGGGAGATGCAATCAAAT GGAACTTCACAAAGTTCCTGGTGAACAAACAAGGCAAAGTCATGGAGCGTTACGCTCCCACTACTTCGCCTCTTAAGATCGAGAAGGATATCCAGAACCT GTTGGAAATTGCTTCTGCTTGA
AA sequence Show only first row Show all	>Lus10027021 pacid=23151526 polypeptide=Lus10027021 locus=Lus10027021.g ID=Lus10027021.BGIv1.0 annot-version=v1.0 MADSSSLLPPNSIYDFTVKDIKGSDVNLSEYKGKVLLIVNVASKCGLTHANYKELNVLYQKYKDQGLEILAFPCNQFGGQEPGTIDEIQDTVCTIFKAEF PIFDKVDVNGKNTAEVYKYLKSEKGGFLGDAIKWNFTKFLVNKQGKVMERYAPTTSPLKIEKDIQNLLEIASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	0	1
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	2.0	0.9506
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	3.3	0.9606
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	5.2	0.9566
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	5.5	0.9444
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	5.5	0.9592
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	8.5	0.9402
AT2G35736			unknown protein		Lus10004354 [exp]	12.1	0.9014
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	14.1	0.9357
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	16.6	0.9228
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	17.9	0.9165

Compare expression of checked genes

Lus10027021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.