Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05870 184 / 7e-59 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G31560 182 / 4e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 164 / 3e-51 Protein of unknown function (DUF1685) (.1) AT3G22690 101 / 2e-24 unknown protein AT5G28690 78 / 1e-17 Protein of unknown function (DUF1685) (.1) AT4G33985 76 / 2e-17 Protein of unknown function (DUF1685) (.1) AT3G50350 76 / 6e-17 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT1G08790 74 / 2e-16 Protein of unknown function (DUF1685) (.1) AT3G04700 74 / 3e-16 Protein of unknown function (DUF1685) (.1) AT3G04710 75 / 1e-15 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025562 [exp] 421 / 6e-152 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10042536 [exp] 91 / 3e-23 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 92 / 5e-23 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 90 / 5e-23 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 65 / 4e-13 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10002400 [exp] 62 / 8e-12 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10038023 [exp] 63 / 1e-11 AT2G46940 162 / 4e-49 unknown protein Lus10014064 [exp] 60 / 2e-11 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 57 / 3e-10 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126700 [exp] 204 / 6e-67 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 188 / 2e-60 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.013G042400 [exp] 93 / 2e-23 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 89 / 9e-22 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 88 / 1e-21 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 86 / 1e-20 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.009G101300 [exp] 68 / 3e-14 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.014G111000 [exp] 66 / 7e-13 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 56 / 4e-09 AT2G46940 111 / 4e-29 unknown protein Potri.004G059900 [exp] 45 / 2e-05 AT2G42760 99 / 6e-25 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10027022 pacid=23151579 polypeptide=Lus10027022 locus=Lus10027022.g ID=Lus10027022.BGIv1.0 annot-version=v1.0 ATGGGAAGAATCGCTTCTGAGATCATCAATGGCGACGAATCAAACTCACCTTCCAGATTCTCTCCACAATCAGAACAACACTACTCATCCTTTCTAGGTG ACCAACCCGAAAAGACGGCCAATCAGACCCAAGGAGGCGACGATGGGGCCGACGAAACCCTACAGATATGGGAGAAGCTCCAGAGATCGAACTCCACCGC CACTGCTAACGGCAGCACCATCATCGACAGGAGGCTGTCAAGGAAGAGGACGAACAGGAAGAACCAGGTCCTGCTAGAAGGCTATGTCGATCTTGCCGAC GATGATTTGAAGAGGGGCAAGAGCTTGAACGACGACGATCTAGATGAGTTGAAGGGGTGTTTGGATCTCGGATTTGGTGGATTCAGCTACGACGAGATCC CTGAGCTCTGCAACACTTTGCCTGCTCTCGAGCTTTGCTACTCGATGAGCCAGAAGTACCTTGATGACACCTCATCCCAGAAAACACCACCTCCTAACGC TGCTGACGGATCTTCCGATTCTTCTGATCTTACTCCTTCCGATCATCCCAGTCCTATTGCTAATTGGAAGATCTCCAGTCCTGGTGACCATCCGGAAGAT GTGAAAGCAAGGTTGAAATATTGGGCACAGGCTGTTGCTTGTACTGTCAAATTATGCAGCTGA
AA sequence Show only first row Show all	>Lus10027022 pacid=23151579 polypeptide=Lus10027022 locus=Lus10027022.g ID=Lus10027022.BGIv1.0 annot-version=v1.0 MGRIASEIINGDESNSPSRFSPQSEQHYSSFLGDQPEKTANQTQGGDDGADETLQIWEKLQRSNSTATANGSTIIDRRLSRKRTNRKNQVLLEGYVDLAD DDLKRGKSLNDDDLDELKGCLDLGFGGFSYDEIPELCNTLPALELCYSMSQKYLDDTSSQKTPPPNAADGSSDSSDLTPSDHPSPIANWKISSPGDHPED VKARLKYWAQAVACTVKLCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31560			Protein of unknown function (D...		Lus10027022 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	1.0	0.8696
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	10.2	0.7960
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10029662 [exp]	13.2	0.8153
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	13.5	0.7951
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	14.8	0.8057
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	15.3	0.7956
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	16.5	0.7946
AT3G05170			Phosphoglycerate mutase family...		Lus10035350 [exp]	16.7	0.7517
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	17.4	0.8008
AT1G36730			Translation initiation factor ...		Lus10010980 [exp]	24.0	0.7857

Compare expression of checked genes

Lus10027022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.