Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51325 40 / 9e-05 RING/U-box superfamily protein (.1) AT5G41400 40 / 0.0003 RING/U-box superfamily protein (.1) AT4G11360 39 / 0.0004 RHA1B RING-H2 finger A1B (.1) AT4G11370 39 / 0.0008 RHA1A RING-H2 finger A1A (.1) AT5G47610 38 / 0.001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025563 [exp] 139 / 5e-42 AT5G47610 91 / 2e-23 RING/U-box superfamily protein (.1) Lus10002194 [exp] 44 / 1e-05 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220700 [exp] 39 / 0.001 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10027023 pacid=23151492 polypeptide=Lus10027023 locus=Lus10027023.g ID=Lus10027023.BGIv1.0 annot-version=v1.0 ATGACGCGCCATTGGGCCACCTCCGCCAATTTCCTTACAACAGCCGACGCTTCCTTAATCCAGTCTCCGCCGCCGACAACCCACAACACCTCCTCCGCGC TCTCGCCGTCCGCCGCCACAATCTTGATCGTCCTCCTCTGCATCGTAATCTGCGTGGTGGCTCTCAACGCAGCCTTCCGCTGCTTCTTGGCCGGCGGCCG GACGTCGGCGGCGGGTAGGAGAAGAGTGCCAGAGAGGAACAAAGAGAGCGTGGCGGCCAGCGTGGCGGTGGCGGAAGTGGCGTCGACGGTTGTGTTTCGC GGTGGCGGCGGTAGTGAGGAGGAGTGCTGTGCGATTTGTTTGGCGGAGTTTGAAGAAGGGGAGGAGGTTGAGTTGTTGGGGAATTGCGGCCATGGGTTTC ATAATCAATGTATTCAGCGGTGGTTTTTTATTTCTTCTAGTACGAATTGTTCGTGTCCGACTTGCCGGCGACCTTGTCTTCCGCCGCCGGCAGAGAGCCA GCTAACTGACAACCGATACTGCTGA
AA sequence Show only first row Show all	>Lus10027023 pacid=23151492 polypeptide=Lus10027023 locus=Lus10027023.g ID=Lus10027023.BGIv1.0 annot-version=v1.0 MTRHWATSANFLTTADASLIQSPPPTTHNTSSALSPSAATILIVLLCIVICVVALNAAFRCFLAGGRTSAAGRRRVPERNKESVAASVAVAEVASTVVFR GGGGSEEECCAICLAEFEEGEEVELLGNCGHGFHNQCIQRWFFISSSTNCSCPTCRRPCLPPPAESQLTDNRYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47610			RING/U-box superfamily protein...		Lus10027023 [exp]	0	1
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	14.0	0.8473
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	17.5	0.8426
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10012200 [exp]	18.2	0.8289
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	19.4	0.8380
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	28.1	0.8095
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	32.5	0.8198
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10034671 [exp]	35.0	0.7717
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10007535 [exp]	36.0	0.8246
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	37.4	0.8278
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	39.1	0.8258

Compare expression of checked genes

Lus10027023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.