Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46680 154 / 3e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 89 / 2e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G61990 86 / 3e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 84 / 1e-18 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G57250 83 / 3e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 82 / 7e-18 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 81 / 1e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 80 / 2e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 80 / 3e-17 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 79 / 6e-17 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039036 [exp] 315 / 7e-107 AT5G46680 399 / 1e-135 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10025564 [exp] 276 / 2e-92 AT5G46680 276 / 2e-88 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10008185 [exp] 86 / 5e-19 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 82 / 6e-18 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 82 / 1e-17 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 81 / 2e-17 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 79 / 6e-17 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 79 / 6e-17 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 79 / 6e-17 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006500 [exp] 194 / 1e-59 AT5G46680 444 / 1e-153 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 94 / 3e-22 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.002G109500 [exp] 82 / 5e-18 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G013300 [exp] 82 / 7e-18 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131400 [exp] 81 / 9e-18 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 81 / 1e-17 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 81 / 2e-17 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G137200 [exp] 80 / 4e-17 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G242200 [exp] 79 / 8e-17 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 79 / 9e-17 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027024 pacid=23151570 polypeptide=Lus10027024 locus=Lus10027024.g ID=Lus10027024.BGIv1.0 annot-version=v1.0 ATGAAGAGTAAAGGGTATACTTCTGATGGCTTTGGGTATTGCACGGCTATGGGTGCTCTGCTCAAGTTTGGTAAAGTTGAAGAGGCGGCTAGGTTCAAGG ATGAGATGATAAACAATGGTATTGAGCTTGATTTGGTGTCATATAATACACTACTGAATATCTCACGTAAAGAAGGTAAAATGGAAGAATTTTATTCTTT GAGAGACCAAATCAAAAAGAGTGGTTTGGAACATGATAAATACACACATACTATATTTGTGGACGTATTGTGCAAGGAAGGTTATATTGAGCGGGCACAA CAACGCCTGAAGGAAATGAATACGATGGGTTTTCATTCCACTTCAGCTGCTACAAACTCTGTTATTGACGGATTAGCTAAAGCTGGCAATTATGAGCTTG CTACAAAAATGTTGGCATCGATGAAGGTGAGAGATGCCTTTTCCTATTCATCATTGGTTTATAATCTTTCCAAAGCTATAAGGTTCAGATGTGCTGAGGA GCTCTTGCTCTACTGCGTGAAACAAAGGATGAAATTACTCCCGGCTGCGAAATGGGCTCTTCTTGATGGTCTCCAATATGATGGCTTTCAAGCAGAAGCT AGGATACTTAGGGATATAATTCGACGTTTTCAGATTATACGACCGTGA
AA sequence Show only first row Show all	>Lus10027024 pacid=23151570 polypeptide=Lus10027024 locus=Lus10027024.g ID=Lus10027024.BGIv1.0 annot-version=v1.0 MKSKGYTSDGFGYCTAMGALLKFGKVEEAARFKDEMINNGIELDLVSYNTLLNISRKEGKMEEFYSLRDQIKKSGLEHDKYTHTIFVDVLCKEGYIERAQ QRLKEMNTMGFHSTSAATNSVIDGLAKAGNYELATKMLASMKVRDAFSYSSLVYNLSKAIRFRCAEELLLYCVKQRMKLLPAAKWALLDGLQYDGFQAEA RILRDIIRRFQIIRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	1.0	0.8853
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10027025 [exp]	1.4	0.8667
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	1.7	0.8664
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	2.2	0.8462
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	3.5	0.8633
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	4.6	0.8399
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	5.3	0.8143
AT3G12050			Aha1 domain-containing protein...		Lus10029141 [exp]	6.0	0.7933
AT4G12010			Disease resistance protein (TI...		Lus10023051 [exp]	9.5	0.8156
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	9.9	0.8290

Compare expression of checked genes

Lus10027024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.