Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46680 69 / 7e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 61 / 3e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G32630 59 / 2e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63080 59 / 2e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 59 / 2e-10 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03560 58 / 3e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62914 57 / 1e-09 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63400 56 / 3e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 55 / 5e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 55 / 6e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041927 [exp] 63 / 7e-12 AT5G18475 341 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020134 [exp] 58 / 5e-10 AT1G12700 254 / 3e-78 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10021645 [exp] 57 / 8e-10 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030513 [exp] 57 / 1e-09 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034721 [exp] 56 / 2e-09 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 56 / 2e-09 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 56 / 3e-09 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035735 [exp] 56 / 3e-09 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10036238 [exp] 56 / 3e-09 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006500 [exp] 72 / 8e-15 AT5G46680 444 / 1e-153 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G149800 [exp] 62 / 2e-11 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 61 / 4e-11 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 61 / 4e-11 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 60 / 7e-11 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G068700 [exp] 59 / 2e-10 AT2G36240 509 / 4e-178 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G074500 [exp] 59 / 2e-10 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 59 / 2e-10 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 58 / 4e-10 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 58 / 5e-10 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027025 pacid=23151550 polypeptide=Lus10027025 locus=Lus10027025.g ID=Lus10027025.BGIv1.0 annot-version=v1.0 ATGCCTCACGGGGAGTGCTTCCTGATGTCGTCACTTTCAATACGCTCATCAACGCCTACTGTTGTCTCGTCAGCTTCGAGGCTGCTTATACTATACTCGT TAGAATGGAAAAAAGCTGGGATTGGACCAGATGTGGTATCTTTCAATACTTTGATCGCCGGTGTTACTAGACGCCGCTTGTTCGATAAGGCCACCTACCT GTTCGAGGAGGAAATGCCTCAAAGAAACATTTCCCCTGATATTTTGACCTTGAACACCATGCACTCTTTCTTCCAGCAGAGAAAGACCGGGGAAGCTTAT AAGATCTTGCCAATGATTGATGATGGGTTGTGTAAAGCTGGGAAATTGGGAGCTGCTAGACGGGTTATTCGAGAATTCGAGGCTTCTGGGCACGCTGCCA ATGCTATAACTTATACCACAGATGATGAATTGTTGGTTTATTGTCTCGGACACCAGACCGCTCGTGCCCGCCCATTCTGTCTCGCCCTAAGTGGAATGGC TCTCTTAGTTAGGCTGCGCCCCGACCCGAGTCCCCACGTCTAA
AA sequence Show only first row Show all	>Lus10027025 pacid=23151550 polypeptide=Lus10027025 locus=Lus10027025.g ID=Lus10027025.BGIv1.0 annot-version=v1.0 MPHGECFLMSSLSIRSSTPTVVSSASRLLILYSLEWKKAGIGPDVVSFNTLIAGVTRRRLFDKATYLFEEEMPQRNISPDILTLNTMHSFFQQRKTGEAY KILPMIDDGLCKAGKLGAARRVIREFEASGHAANAITYTTDDELLVYCLGHQTARARPFCLALSGMALLVRLRPDPSPHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10027025 [exp]	0	1
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	1.4	0.8667
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	3.5	0.8183
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	7.3	0.8236
AT3G12050			Aha1 domain-containing protein...		Lus10029141 [exp]	7.4	0.7838
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10029873 [exp]	9.5	0.7800
AT4G36980			unknown protein		Lus10019346 [exp]	10.9	0.7888
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	15.0	0.7407
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	15.9	0.8307
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	17.5	0.7964
AT3G51130			unknown protein		Lus10014270 [exp]	22.8	0.7997

Compare expression of checked genes

Lus10027025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.