Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43330 652 / 0 ATINT1 inositol transporter 1 (.1) AT1G30220 332 / 2e-107 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 313 / 2e-100 ATINT3 nositol transporter 3 (.1) AT4G16480 305 / 5e-97 ATINT4 inositol transporter 4 (.1) AT4G36670 189 / 4e-54 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT5G16150 188 / 3e-53 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G20780 185 / 4e-52 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 182 / 6e-51 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G18480 180 / 1e-50 AtPLT3 Major facilitator superfamily protein (.1) AT2G16120 180 / 1e-50 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025565 [exp] 859 / 0 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10043120 [exp] 548 / 0 AT2G43330 593 / 0.0 inositol transporter 1 (.1) Lus10028118 [exp] 338 / 6e-110 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 338 / 1e-109 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10010501 [exp] 317 / 2e-101 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 310 / 5e-99 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 305 / 5e-97 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 298 / 2e-94 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 296 / 1e-93 AT4G16480 769 / 0.0 inositol transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126800 [exp] 716 / 0 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 694 / 0 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.006G015300 [exp] 320 / 4e-103 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 315 / 3e-101 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 310 / 3e-99 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.017G032400 [exp] 260 / 7e-85 AT2G43330 272 / 8e-90 inositol transporter 1 (.1) Potri.017G032600 [exp] 206 / 4e-64 AT2G43330 0 / 1 inositol transporter 1 (.1) Potri.004G133340 [exp] 191 / 2e-57 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.013G135200 [exp] 198 / 4e-57 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 196 / 2e-56 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10027026 pacid=23151575 polypeptide=Lus10027026 locus=Lus10027026.g ID=Lus10027026.BGIv1.0 annot-version=v1.0 ATGACGATTGGGTCGACCCCAGGGAGCTCAGGGTACCTGGATTTGTTCCCGGAGAGGAGAATGTCTTATTTCAGTAATGCCTACGTGTTAGGGTTGACTG TTATTGCTGGAATCGGCGGTCTCCTCTTTGGCTATGATACTGGTGTTATTTCAGGGGCACTCCTCTATATTAGAGATGAATTTGAGGAGGTCAATCGAAG CAGCTTCCTTCAGGAAACAATAGTAAGCATGGCACTGGTTGGTGCTATGATAGGAGCTGCATCAGGGGGTTGGATTAATGACGCGTATGGGCGCAAGAAG GCTACACTTCTTGCTGATGTTGTCTTTGCTTCCGGATCCATTGTTATGGCTGCTGCACCAAATCCTTATGTTCTAATTGTGGGACGACTTTTAGTCGGAC TTGGTGTTGGTGTTGCATCTGTTACTGCTCCTGTGTATATTGCTGAAGCATCTCCATCAGAAGTGAGGGGAGGATTAGTGAGCACCAATGTTCTTATGAT AACTGGTGGACAGTTCCTTTCCTACCTTGTAAATCTTGCCTTCACAGAGGTTCCAGGAACGTGGCGGTGGATGCTTGGAGTTGCAGCTGTGCCTGCTATT ATCCAATTCTGCCTAATGCTCTTAATGCCAGAGTCTCCTAGATGGCTTTTCATGAAGAATGAGGAAACCAAAGCCATCGAAATACTTGCTAGGATATATG ACATTGACAGGTTGGAGGACGAGATCGAATCCCTTTCTGCTGCTTCTCTCGAGGACCGTCAGGAAGAAAACAAAGTCTCGTACTTTGATGTTTTCAAAAC TAAAGAAATTAGGCTTGCATTTCTTGCTGGTGCCGGTCTACAGGCATTCCAGCAGTTTACCGGTATAAACACGGTCATGTATTACAGCCCGACAATCGTC CAAATGGCTGGCTTCTCTTCCAACCAATTAGCTCTCCTCCTTTCCTTAGTAGTTGCGGCCATGAATGCTGCCGGAACCATCGTAGGCATTTACATGATCG ACCATTTCGGAAGAAAGAAGCTAGCCCTCTCGAGCTTAGCTGGAGTTATCGTATCGCTCATAATACTCTCCGGTGCATTCTACGGCCAATCAACAGAACC CTCGAACGGCCTTTTCGGATGGCTCGCGGTGATAGGTTTAGCCCTTTACATCGCTTTCTTCTCTCCCGGAATGGGACCTGTACCATGGACTGTCAACTCG GAGATCTACCCTTCCCAGTACAGAGGACTCTGCGGCGGGATGTCAGCGACTATCAACTGGATTTCGAACTTGATAGTGGCGCAGAGCTTCCTCTCGATAG CCGAAGTTGCCGGTGCAGCTACGACTTTCTTGATCCTCGCTTGCATTGCTGTGGCAGCGGTCGTGTTTGTGGCCACTTTCGTTCCGGAGACCAAGGGGCT GACGTTTGTGGAAGTGGAGCAGATATGGAAGGAACGAGCTTACGGAAGCGGGTACAGCTCCGAAAGCCTTCTCGAACGAGGAGATGATGACGGAACTTTG TGA
AA sequence Show only first row Show all	>Lus10027026 pacid=23151575 polypeptide=Lus10027026 locus=Lus10027026.g ID=Lus10027026.BGIv1.0 annot-version=v1.0 MTIGSTPGSSGYLDLFPERRMSYFSNAYVLGLTVIAGIGGLLFGYDTGVISGALLYIRDEFEEVNRSSFLQETIVSMALVGAMIGAASGGWINDAYGRKK ATLLADVVFASGSIVMAAAPNPYVLIVGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNLAFTEVPGTWRWMLGVAAVPAI IQFCLMLLMPESPRWLFMKNEETKAIEILARIYDIDRLEDEIESLSAASLEDRQEENKVSYFDVFKTKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV QMAGFSSNQLALLLSLVVAAMNAAGTIVGIYMIDHFGRKKLALSSLAGVIVSLIILSGAFYGQSTEPSNGLFGWLAVIGLALYIAFFSPGMGPVPWTVNS EIYPSQYRGLCGGMSATINWISNLIVAQSFLSIAEVAGAATTFLILACIAVAAVVFVATFVPETKGLTFVEVEQIWKERAYGSGYSSESLLERGDDDGTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	1.7	0.9288
AT3G11690			unknown protein		Lus10016197 [exp]	2.0	0.9314
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003158 [exp]	2.6	0.9223
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	5.5	0.9255
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	8.7	0.9086
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	8.9	0.9318
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	10.2	0.9219
AT3G14830			unknown protein		Lus10041938 [exp]	10.4	0.9254
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	20.8	0.9157
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	21.4	0.9287

Compare expression of checked genes

Lus10027026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.