Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 54 / 7e-09 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 49 / 3e-07 F-box family protein (.1) AT4G22390 45 / 9e-06 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031512 [exp] 154 / 9e-46 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10043335 [exp] 150 / 1e-45 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040463 [exp] 150 / 4e-44 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10010910 [exp] 128 / 6e-36 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10000190 [exp] 125 / 1e-34 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 125 / 1e-34 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 125 / 1e-34 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10015169 [exp] 99 / 2e-24 AT5G64330 264 / 7e-79 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10040338 [exp] 84 / 2e-19 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012500 [exp] 66 / 4e-13 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 66 / 4e-13 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 62 / 2e-11 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 61 / 3e-11 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 59 / 2e-10 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 53 / 1e-08 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G224200 [exp] 51 / 6e-08 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 51 / 9e-08 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.010G154500 [exp] 50 / 1e-07 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 49 / 6e-07 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027028 pacid=23151592 polypeptide=Lus10027028 locus=Lus10027028.g ID=Lus10027028.BGIv1.0 annot-version=v1.0 ATGGGTCATGAGTTCATCGGGGTGTTCTTCGGCAACTCGTTACATTGGTGTATCCGGAGATCTGTTCGTGAACATGTGATTAATGCAATTGATCTCGCGT CAAACACCTACTGCCAGCTGCAGTTGCCCAAAGCCGGTTTCGGTCCGGTTTATTTTTTGAACGTGGGCATTGTGGGCGGGCGCTTGTGTGTCGGTGGTTT CCTCAAAGATGAGAGGGAAAATGGCATCTGGGTTATGGACGAGTATGGGAATCCTGAATCGTGGAATAGGATTTATTCCATGCAGGATATTAGCGGCGAT TTGTGCCCTTTGGCTGTAACCTCTGTGGGGAGTATCGGAGAAAAGATTCGTTTGATGATTAATTCTGAAATACTTGTTTGGTATGATCCAACGAAGAAGA ATGTCTCGAGGACTGATACAAGCTTTTACCACAAACCACATGAAGCAGTCTATTACCTGGAGAGTATGGTGAAGATATTTTCAAATGATGATGAAGCCCC ATGCTTACCATAA
AA sequence Show only first row Show all	>Lus10027028 pacid=23151592 polypeptide=Lus10027028 locus=Lus10027028.g ID=Lus10027028.BGIv1.0 annot-version=v1.0 MGHEFIGVFFGNSLHWCIRRSVREHVINAIDLASNTYCQLQLPKAGFGPVYFLNVGIVGGRLCVGGFLKDERENGIWVMDEYGNPESWNRIYSMQDISGD LCPLAVTSVGSIGEKIRLMINSEILVWYDPTKKNVSRTDTSFYHKPHEAVYYLESMVKIFSNDDEAPCLP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	0	1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	1.4	1.0000
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	3.5	1.0000
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	3.7	1.0000
					Lus10033149 [exp]	4.6	1.0000
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	4.9	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	5.0	1.0000
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	5.3	1.0000
					Lus10012394 [exp]	5.7	0.9772
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	6.3	1.0000
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	7.1	0.9823

Compare expression of checked genes

Lus10027028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.