Plant FIBer expression Database

Lus10027029 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40520 286 / 1e-87 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025568
[exp]
1083 / 0 AT5G40520 285 / 3e-87 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G018300
[exp]
405 / 1e-133 AT5G40520 374 / 1e-120 unknown protein
PFAM info
Representative CDS sequence
>Lus10027029 pacid=23151499 polypeptide=Lus10027029 locus=Lus10027029.g ID=Lus10027029.BGIv1.0 annot-version=v1.0
ATGAAGAGAAGTAGACCAATTGATATTGCTCCTGGCGTTTTGGACAAGTGCTCTGAAAAGCCACTGTCATTTGAGTATGATCAATCTCTACAGACGGTGA
AGGATGGAGAATTAGGTTGTTTCTGGACTGACCACAGATCGTTACTTTCGGAACTTAAGCAACAGGACCAGATGCTTCGACTGAAAAGAAGGTTTGTAAT
GGGAGTGGAGATGTCCAAATCTGAGCAGAAGAGAGGACTTTTGAAATCTAAGTGCGTGCCTGAATCTTTACTTAGGGAAGATGATATATTTTATGATGAT
GTTAAAGCATATGTTGAAGAAGCGTTTGGAGGTCACAATGTTCAGAAAGAGGTCGAAACTCCGCTTCTCAACTTGAACAATATGAAAGAGATCGTGATGT
GTTGTCTTGATTCTTTGACCAGTAAGGGCCTTTACCTTCTTGCGATGTTCCTTACAAAAAGAATGCCGAAGGCTGAAAAGACACGCAAGAAAATGAGAGA
GGTAATCAAGAAATCTTTTCCAGGATTTCTTAGGGATCAAAGAAGCAACCCTGAAAATTCAGAAACTTTAAGAAAGTTGTCTCAGCTTCTCAGCGATCGG
GAGAATATTCAACTAAACTGTTGTTTGGATAACTTTCAACATCAAGTTGCTGCAATTCAAATGTTGGGCAGACTAAATGAGTTGCCAACTGAAGCATTGT
TCGCTATGCGCAGGAAACTAAGAGGTATACCAGCAAAATTACCTCATTTACCGAAAAGGAGACATGGATGGAGTCGAGATACCTTGATTCATAAGATAAA
GAAGGCCAGCCAGATAATGCTGTCAGAACTTAGCACAGGTAGGCGGAACAGCCTTCATGAACCTTTAGCCAAGTCTCTTGCCGTTGCAGGTTTATCACTA
AAGTTGAAAAGATGTCCTGATTACTACATGCCGAAGTTTGCAAATTTCCCCCCAGAAGTAGAAACGTTACAGAATGAAATAATCAAGGCTATTAGGCTAC
TCGAATCGAAGGTCACAATGTCAGAGCTTCAAAGCATGCAGAATTTGTTCGATCCAAGTGGCAATATCTCAAAGCGGTCTTTGCGTACATTCATGAAGAA
ACTACTTGCTGAGTATTTATTTGAGTGTGATGAATTAGACTCCATTCCACAGGAATTGGTGGATGCTCTTGCTATTATCAATAAGAATTCTCGGGTTTCA
CCGGACTCAAACCACATCATTGATGAAGAAATCGAATGTATCTTATGTGTAAGTTCCAGAATAAAGCAGCTGGTTTGGGATTCAACTCCTGATCACGGTT
TTGACGAGGATTTTGCTGATGCATATTTAGAAGGACAATCTGATTATGAAGATGACGAGAGTTGTGATATTTCTCTCCTGAAGCCAGGCTCTCCAAGTTC
CATGTGTGTATCTGTGGACTCGGATAATGATGGAGAGAGTGTCGCAGAGCATAACCCTCTCGAATGCGAGTCAGATATCACCGATGGTTGTGGTAGTCCT
TCTCAAGCGCAGGAAGTTGAAAGTCATCCTGTATCCAGTGGGGGAGATTCTGGTCCTGACGATCAGATTACCCGCAAAAACTTGTACCTCGACATCCAAG
AAGCTGCTGATTCCGCGAGCATGGTTTCTTACAACCTCATTGGCCATCTGTTGGAGGGGTTGGCTCGGGAAAAAAGGCTAGATCTTGATTCGAATCAAGG
TTCTATCATTGTTCAAGTTGTTGAAGATCTATTACCTTCCTTCCCCAGGAGCCGAGTGGCGAAACTGAAGGAGCTTATGGGTACTTTAAGCAGCTAA
AA sequence
>Lus10027029 pacid=23151499 polypeptide=Lus10027029 locus=Lus10027029.g ID=Lus10027029.BGIv1.0 annot-version=v1.0
MKRSRPIDIAPGVLDKCSEKPLSFEYDQSLQTVKDGELGCFWTDHRSLLSELKQQDQMLRLKRRFVMGVEMSKSEQKRGLLKSKCVPESLLREDDIFYDD
VKAYVEEAFGGHNVQKEVETPLLNLNNMKEIVMCCLDSLTSKGLYLLAMFLTKRMPKAEKTRKKMREVIKKSFPGFLRDQRSNPENSETLRKLSQLLSDR
ENIQLNCCLDNFQHQVAAIQMLGRLNELPTEALFAMRRKLRGIPAKLPHLPKRRHGWSRDTLIHKIKKASQIMLSELSTGRRNSLHEPLAKSLAVAGLSL
KLKRCPDYYMPKFANFPPEVETLQNEIIKAIRLLESKVTMSELQSMQNLFDPSGNISKRSLRTFMKKLLAEYLFECDELDSIPQELVDALAIINKNSRVS
PDSNHIIDEEIECILCVSSRIKQLVWDSTPDHGFDEDFADAYLEGQSDYEDDESCDISLLKPGSPSSMCVSVDSDNDGESVAEHNPLECESDITDGCGSP
SQAQEVESHPVSSGGDSGPDDQITRKNLYLDIQEAADSASMVSYNLIGHLLEGLAREKRLDLDSNQGSIIVQVVEDLLPSFPRSRVAKLKELMGTLSS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40520 unknown protein Lus10027029
[exp]
0 1
AT4G04940 transducin family protein / WD... Lus10035842
[exp]
6.8 0.9060
AT2G02150 EMB2794 EMBRYO DEFECTIVE 2794, Tetratr... Lus10034421
[exp]
11.4 0.8726
AT5G09840 Putative endonuclease or glyco... Lus10020866
[exp]
13.5 0.9037
AT3G06530 ARM repeat superfamily protein... Lus10008676
[exp]
14.6 0.9039
AT2G40720 Tetratricopeptide repeat (TPR)... Lus10030522
[exp]
17.3 0.8824
AT1G18450 ATARP4 actin-related protein 4 (.1) Lus10042980
[exp]
17.3 0.8843
AT2G22410 SLO1 SLOW GROWTH 1 (.1) Lus10002553
[exp]
18.1 0.8648
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Lus10040776
[exp]
18.8 0.8207
AT1G16480 Tetratricopeptide repeat (TPR)... Lus10017082
[exp]
19.0 0.8792
AT1G10270 GRP23 glutamine-rich protein 23 (.1) Lus10002990
[exp]
20.4 0.8936

Lus10027029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.