Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11910 119 / 1e-29 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 119 / 1e-29 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58250 82 / 2e-17 TRAF-like family protein (.1) AT2G01790 77 / 6e-16 TRAF-like family protein (.1) AT3G58340 76 / 2e-15 TRAF-like family protein (.1) AT3G27040 74 / 1e-14 Meprin and TRAF (MATH) homology domain-containing protein (.1) AT3G58270 72 / 7e-14 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT2G05420 70 / 2e-13 TRAF-like family protein (.1) AT3G58360 70 / 2e-13 TRAF-like family protein (.1) AT3G58260 69 / 7e-13 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025569 [exp] 435 / 1e-152 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 217 / 1e-67 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 219 / 6e-64 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10007254 [exp] 164 / 5e-45 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008233 [exp] 158 / 1e-44 ND / Lus10013548 [exp] 147 / 3e-41 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 141 / 1e-39 ND / Lus10013547 [exp] 122 / 5e-33 AT3G44800 72 / 2e-14 Meprin and TRAF (MATH) homology domain-containing protein (.1) Lus10034130 [exp] 125 / 2e-31 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064100 [exp] 128 / 2e-32 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 127 / 2e-32 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 122 / 2e-30 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 122 / 2e-30 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G075000 [exp] 75 / 1e-14 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G163300 [exp] 71 / 4e-13 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.001G130700 [exp] 65 / 1e-11 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 62 / 1e-10 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.008G099600 [exp] 59 / 8e-10 AT3G17380 344 / 1e-118 TRAF-like family protein (.1) Potri.014G055400 [exp] 56 / 1e-08 AT3G17380 244 / 2e-79 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10027030 pacid=23151488 polypeptide=Lus10027030 locus=Lus10027030.g ID=Lus10027030.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAAATAGCCCGGTCATGAAGAATGATACCAACAAGTTCACATGGAGGATTGATGATTTCTCCAAGCTGGAAACCCTAAAGCCTTATTCTG ACACTTCTGTAGCAGGGAGCTATAAGTGGGTTCTTGTTCTTCCAAAGGGGAATAATGTTAATCATCTGTCTGTATATTTGGATTTTGCTGATAAGGATTC TATGCCCTCTGGATGGAGTGTCCGAGCTGACTTCAGCATTACTCTTGTTGGCCAACTCACTGGCTCTTCTTCTCTGCAAAAGAGCATGATGTCTGTAAAC TGTTATTTCTGGGGCTATAGGCCATTCTACCCTTACATTACTTGCACACTGAACGCAGTTACCACACACAAATTCAAAAAAGACAAGTCTTATGGGGGAT TTACCAGGTTTCTTCCAATCGGCGACCTTTCTCAGAAAGGATTCCTTGTGAATGATACTCTCATCATTAAAGCTAAAGTTTCTACTGTGATCGAGACTGA TCAAGCTAGCGAAGCTATCAAAGTTGATGGTCTTGATAAGTCAAATGGAACCACTAGAAGTAGTTACCTCTCTCCATCAAGTGTGCAATCAACCTCTCGA AACCTTATGACGGAACTTTCGACAGGGACTGCTAGTAGCAATTCCTCTTCGTTGAATGGAATCTCTTGCTCAATTCGAGGCGATGGTTCGGGTGTGTTGC AACAACAAAGGGAGAAATTACTTGGCTTCTTCCACATGTCACTCAAGGCCCTCAGCCAATCCAAATCACTTGATGAAGTGGAGAACATTGCCCTCGGAAT TCTTAAGCAGGCAACCGATCCGCTAGAGAAGACTGTCCTGAACGACCTGGTCTCACGCCTGGCTGAGTTTAAAGAGATTGTTCCTAGCTCTCTGTCAACT ATTGAAACAAGCCATGATGTGGAATCATCTGTAGCCCAGATGATCAAAGAACTGGAGGTCAGGCTGGTTCACAGGAATGGCAGTTGA
AA sequence Show only first row Show all	>Lus10027030 pacid=23151488 polypeptide=Lus10027030 locus=Lus10027030.g ID=Lus10027030.BGIv1.0 annot-version=v1.0 MAEENSPVMKNDTNKFTWRIDDFSKLETLKPYSDTSVAGSYKWVLVLPKGNNVNHLSVYLDFADKDSMPSGWSVRADFSITLVGQLTGSSSLQKSMMSVN CYFWGYRPFYPYITCTLNAVTTHKFKKDKSYGGFTRFLPIGDLSQKGFLVNDTLIIKAKVSTVIETDQASEAIKVDGLDKSNGTTRSSYLSPSSVQSTSR NLMTELSTGTASSNSSSLNGISCSIRGDGSGVLQQQREKLLGFFHMSLKALSQSKSLDEVENIALGILKQATDPLEKTVLNDLVSRLAEFKEIVPSSLST IETSHDVESSVAQMIKELEVRLVHRNGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	0	1
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	3.9	0.8362
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039993 [exp]	4.0	0.8287
AT2G35210		RPA, AGD10, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10000902 [exp]	4.2	0.8277
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	4.8	0.8679
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	6.3	0.8188
					Lus10033476 [exp]	6.8	0.8488
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	8.1	0.8286
AT5G02710			unknown protein		Lus10015040 [exp]	9.5	0.8010
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	9.9	0.8042
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	11.5	0.8030

Compare expression of checked genes

Lus10027030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.