Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025573 [exp] 414 / 1e-140 AT3G20930 336 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127200 [exp] 47 / 1e-05 AT2G31480 86 / 4e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027034 pacid=23151622 polypeptide=Lus10027034 locus=Lus10027034.g ID=Lus10027034.BGIv1.0 annot-version=v1.0 ATGATGAAGAAGGAAGAGAATGCGAGCTCCGAAACGAGGAACAGTCTTAAGAAGGCGTCGTTGTTGAAGAGGATTGGCTCAATCTGCAGCAGAAGCAAAA ATAAGGGACATGAAAATGGTGGTGCCTCTATGCCATCATCACTGCTGAAGCAAGAAGAGAACGAAACATGTTTGTTTGACGACAACGATGATGGTGATGA TGATTCGTGTTTTTGGCTGTCTTCCTCGACATCTACTTCATCGTTCTTCGACGAGGAATGGATGATCTCCATCTTGGATGGTGATGAGGAGCAGGAAGTT GGTTCATGGGTGATGGAATTTGAGAAAGACATGAGCTTTTTGGTTGATTTGGATATGGATCAGTGGGATTACTGCTGTGTCCCATCTAGCTTCCCTAGCC CTTCTTTCAACACCACTAGTACTGATAGTACTACTACCACTTGTACTGGTACTAACAGAGAGGCAGAGCTAGTTTCTGCTTTTCATTTACCTTCAGACGT TCCATTTTCGGATATGGAACATTTGAAGGTAGCATATTATGGTGATGAGTCACCTTTGCTATGGCCTTTCGAAGGGTGGAATAATCCCGAAGAAACCTGG AGTTTCTTCATTATGTCCCCTCGTAAGGAACATATTGCGAAGGCTGAGAATCAGGAGCATACTGGAGTTGTTTCAAGGAGGAAAAAGATAAGCATACATC GAAAAGAGCTCGATCCACAGCAGAAGGGAGACGTGAAGGCCACGTTCATGGGACCATCGAGGTTGATCAAGTCGTCGTTGTCGTCCTCGAAAAATTCCAA GGCTTTGATGAGAGTTGTACCATCGGAAATGATGAACATGGATCATGGTGATGATAAGTCAATAGAGATGCTGGTGGGGCTTGAAGAGTTTGATGGGAAT GAAGGGATGGATTCATCATCAAAAGAGAACTTGAATTTAGTGAATGGTGGCGTTGGTGATTATATTTTCTCATTGGTGGATTAG
AA sequence Show only first row Show all	>Lus10027034 pacid=23151622 polypeptide=Lus10027034 locus=Lus10027034.g ID=Lus10027034.BGIv1.0 annot-version=v1.0 MMKKEENASSETRNSLKKASLLKRIGSICSRSKNKGHENGGASMPSSLLKQEENETCLFDDNDDGDDDSCFWLSSSTSTSSFFDEEWMISILDGDEEQEV GSWVMEFEKDMSFLVDLDMDQWDYCCVPSSFPSPSFNTTSTDSTTTTCTGTNREAELVSAFHLPSDVPFSDMEHLKVAYYGDESPLLWPFEGWNNPEETW SFFIMSPRKEHIAKAENQEHTGVVSRRKKISIHRKELDPQQKGDVKATFMGPSRLIKSSLSSSKNSKALMRVVPSEMMNMDHGDDKSIEMLVGLEEFDGN EGMDSSSKENLNLVNGGVGDYIFSLVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027034 [exp]	0	1
AT2G22660			Protein of unknown function (d...		Lus10004273 [exp]	4.1	0.9194
					Lus10003616 [exp]	5.1	0.8675
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	14.1	0.9017
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015646 [exp]	21.5	0.8905
					Lus10017305 [exp]	23.0	0.8998
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	23.5	0.8864
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	23.9	0.8864
					Lus10018095 [exp]	25.7	0.8678
AT4G32480			Protein of unknown function (D...		Lus10039838 [exp]	30.0	0.8449
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	32.1	0.8769

Compare expression of checked genes

Lus10027034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.