Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20930 334 / 1e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G32580 84 / 1e-18 plastid developmental protein DAG, putative (.1) AT2G33430 81 / 1e-17 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 79 / 7e-17 plastid developmental protein DAG, putative (.1) AT1G73530 70 / 5e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 67 / 3e-13 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G20030 66 / 1e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 64 / 1e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37510 64 / 4e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13850 62 / 8e-12 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025573 [exp] 610 / 0 AT3G20930 336 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011789 [exp] 84 / 3e-18 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 84 / 3e-18 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10026364 [exp] 69 / 1e-13 AT1G73530 112 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003980 [exp] 67 / 3e-13 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006936 [exp] 67 / 5e-13 AT4G20030 137 / 4e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023758 [exp] 66 / 7e-13 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022551 [exp] 63 / 9e-12 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10014802 [exp] 65 / 2e-11 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237200 [exp] 367 / 1e-125 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 365 / 6e-125 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 160 / 4e-48 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G169900 [exp] 81 / 2e-17 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 81 / 3e-17 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.012G038200 [exp] 76 / 4e-16 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 74 / 1e-15 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G059000 [exp] 64 / 2e-12 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G236300 [exp] 63 / 2e-12 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.011G130300 [exp] 64 / 3e-12 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027035 pacid=23151544 polypeptide=Lus10027035 locus=Lus10027035.g ID=Lus10027035.BGIv1.0 annot-version=v1.0 ATGACTATGAGAGCTCTCTGTCATCCGTTTCCCGCCGCCGGCGCCTCACCCATATCAGAAATGACGGTGGTCGCAGTTACACCCTCCTTCACCGCCGCCA AGCGGGACAATTGCCGCCGCCGCCGACTCCATAACCTCTCGTCTTCATCATCCACTCTCCCCACTCCAATTGCTTGTACATCATCAACAACACCTGCTCC TCTCACTTCCGCCGCCACCTCCGCCACCAACCGCCGCCATTGGCTAGTCCTCATGGATAAGCCTCCCCAGGAGCTCGCTTCCAAACCTGAAATCGTCAAT TACTTCGTCCATACCCTCCAGATTGTTTTACCAAGTGAGAAGGATGCTCAAATGTCTATATACAATGTCTCTTGTGGTGGTGGTGATGATTCTAAACAGT TTGGATTCTGCTGTGACATTGATGAACATGAATCCGCTGAGCTTGCTCGTGTGCCAGGGGTTTTATCCGTAATTCCTGATCCAGATTATGATTCAACCAA AAAGGGTTTTGATTCAAGTAGTGTACGGTGGTTGTTTCCTCCTGGGACGACCAAACACTGGTTAGTTAGGATGAGTAACCCTGGAATTAGTATGGATACT ACAAATGCACAGATGGTTGATCATTGCACCAGTGTATTAACCAAAGTTCTGAATAATGAGAGGGATGCACAGATGTCTATGTATCATGTTTCTTGGCAGT CCGATCTCGAATTCTGTTGTGAACTCGATGAAGATTGTGCGCGCGAATTGGCTGGGGTTCCTGGTGTTTTGTCTGTTGAACCGGACGAGGATTTTCAATC GAAGACTGGTGATTGTAGAGTTCATAATGCTGATGACAATGCAGAGAGACAAAATTCCTCAGAAGCTGTTCATCCACGAACGAAGAAACTATTTGTGACC GGGTTGTCATTTTACACATCTGAGAAGACCTTGAGGGAAGCATTTAAGGGATTTGGTGAACTTGTGGAAGTTAAGAAAATAATTGACAAGATATCAAAAA GGTCGAAAGGCTATGCATTTGTAGAGTACACCACAGAGGAAGCAGCAAGCGCCGCTCTGAAGGAAATGAATGGCAAGATCATCAATGGATGGATGATAAC AGTTGATGTTGCAAAAACTCCAGCTCCGAGTTACAGTAACAGGGGTACATCCAACACCAGAGCCCGGTAA
AA sequence Show only first row Show all	>Lus10027035 pacid=23151544 polypeptide=Lus10027035 locus=Lus10027035.g ID=Lus10027035.BGIv1.0 annot-version=v1.0 MTMRALCHPFPAAGASPISEMTVVAVTPSFTAAKRDNCRRRRLHNLSSSSSTLPTPIACTSSTTPAPLTSAATSATNRRHWLVLMDKPPQELASKPEIVN YFVHTLQIVLPSEKDAQMSIYNVSCGGGDDSKQFGFCCDIDEHESAELARVPGVLSVIPDPDYDSTKKGFDSSSVRWLFPPGTTKHWLVRMSNPGISMDT TNAQMVDHCTSVLTKVLNNERDAQMSMYHVSWQSDLEFCCELDEDCARELAGVPGVLSVEPDEDFQSKTGDCRVHNADDNAERQNSSEAVHPRTKKLFVT GLSFYTSEKTLREAFKGFGELVEVKKIIDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMITVDVAKTPAPSYSNRGTSNTRAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Lus10027035 [exp]	0	1
AT1G26090			P-loop containing nucleoside t...		Lus10034381 [exp]	6.5	0.8281
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	7.3	0.8714
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	17.3	0.8501
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	29.4	0.8346
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	29.9	0.8443
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10020945 [exp]	31.5	0.8305
AT4G03200			catalytics (.1.2)		Lus10002341 [exp]	38.1	0.7952
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	46.4	0.8211
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10031517 [exp]	48.7	0.7936
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	51.5	0.8162

Compare expression of checked genes

Lus10027035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.